RSXS.md

@@ -66,7 +66,7 @@ scanXAS_BL(E_Ti,mcp=True,m3r=True);plot_latest()
 ```
 <br>
 
-# diffractometer
+## diffractometer
 
 - m1 = kphi   
 - m2 = x
@@ -90,7 +90,7 @@ sample(mysample)    # moves to mysample, does not move tth
 ```
 <br>
 
-# motor scans
+## motor scans
 
 ```python
 scanx(-500,500,50)     # absolute scan (start,stop,step)
@@ -110,7 +110,7 @@ Clear_Scan_Positioners('Kappa')       # remove extra positioner (eg after th2th
 
 <br>
 
-# srs setup
+## srs setup
 
 With shutter close or slit at 0 (faster), 'INPUT OFFSET' set 'ON' and 'UNCAL'
 - make sure the count goes down (not up) when closing the shutter! If the count goes up without beam, change the INVERT ON/OFF - as of 2021_2 all of our SRSs are INVERT ON (D3/D4/TEY/mesh) 
@@ -123,7 +123,7 @@ With shutter close or slit at 0 (faster), 'INPUT OFFSET' set 'ON' and 'UNCAL'
 
 <br>
 
-# mcp
+## mcp
 ```python
 MPA_HV_ON()
 MPA_HV_Set(2975)
@@ -140,7 +140,7 @@ roi=4;  MPA_ROI_SetUp(535,539,400,400,roi)  #set up ROI4 = 400x400 at the center
 
 <br>
 
-# vortex
+## vortex
 For detailed instructions see [manual here](https://git.aps.anl.gov/rodolakis/Macros_29id/-/wikis/RSXS/vortex).
 
 
@@ -164,9 +164,9 @@ mcascan(add_vortex=False) # chooses to ignore vortex channels and removes them f
 
 <br>
 
-# analysis
+## analysis
 
-## basic mda plots:
+### basic mda plots:
 ```python
 # n1,n2,n3 is a scan number
 # d1,d2,d3 is a detector number  - see table below
@@ -190,7 +190,7 @@ fit_centroid(n)        # to calculate avg centroid position during scan n
 ```
 
 
-## nData
+### nData
 ```python
 from Macros_29id.IEX_nData import *
 
@@ -217,7 +217,7 @@ plt.show()
 ```
 
 
-## mdaFile
+### mdaFile
 ```python
 mydata=mdaFile(1,3)   # loads mda scans 1 to 3
 mydata.update(4)      # loads another scan
@@ -228,7 +228,7 @@ mydata.header[3].UB   # return dictionary of UB metadata
 
 <br>
 
-# detector number
+## detector number
 
 | Detector 	| Det Number Raw signal 	| Det Number Det/I0 	|                      Description                      	|             PV             	| Controller 	|
 |:--------:	|:---------------------:	|:-------------------:	|:-----------------------------------------------------:	|:--------------------------:	|:----------:	|