RSXS.md

 
 <br>
 
-# Outline:
+# Outline
 
 - [detectors](#Detectors)
 - [energy](#Energy)
@@ -19,7 +19,7 @@
 
 <br>
 
-## Detectors:
+## Detectors
 
 
 | Name 	| Description    | Ang. acceptance<br>HxV (deg)    | Offset 	    | Max tth 	| Det Num 	|  Det/ $I_0$ Num 	|
@@ -44,7 +44,7 @@ See below for a complete list of signals recorded during a scan and their corres
 
 <br>
 
-## Energy:
+## Energy
 
 
 ```python
@@ -68,7 +68,7 @@ scanXAS_BL(E_Ti,mcp=True,m3r=True);plot_latest()
 ```
 <br>
 
-# Diffractometer:
+# Diffractometer
 
 - m1 = kphi   
 - m2 = x
@@ -92,7 +92,7 @@ sample(mysample)    # moves to mysample, does not move tth
 ```
 <br>
 
-# Motor Scans:
+# Motor Scans
 
 ```python
 scanx(-500,500,50)     # absolute scan (start,stop,step)
@@ -112,7 +112,7 @@ Clear_Scan_Positioners('Kappa')       # remove extra positioner (eg after th2th
 
 <br>
 
-# SRS setup:
+# SRS setup
 
 With shutter close or slit at 0 (faster), 'INPUT OFFSET' set 'ON' and 'UNCAL'
 - make sure the count goes down (not up) when closing the shutter! If the count goes up without beam, change the INVERT ON/OFF - as of 2021_2 all of our SRSs are INVERT ON (D3/D4/TEY/mesh) 
@@ -143,7 +143,7 @@ roi=4;  MPA_ROI_SetUp(535,539,400,400,roi)  #set up ROI4 = 400x400 at the center
 <br>
 
 # Vortex
-For detailed instructions on how to turn vortex on/off and set parameters see [manual here](https://git.aps.anl.gov/rodolakis/Macros_29id/-/wikis/RSXS/vortex).
+For detailed instructions see [manual here](https://git.aps.anl.gov/rodolakis/Macros_29id/-/wikis/RSXS/vortex).
 
 
 ```python
@@ -156,17 +156,17 @@ mcacounttime(2) # Sets count time for mca and other det to 2s
 mcascan()       # adds vortex channels as detectors in scan detector list (see detector numbers below) 
                 # adds trigger to run mca in scan
 
-mcascan(save=True)        # same as above + saves mca spectra taken at each point of the scan
+mcascan(save_image=True)        # same as above + saves mca spectra taken at each point of the scan
                 # save directory is determined by mda directory in scan record
                 # MCA spectra are saved into subdirectories of the scan files / scan#
 
-mcascan(add_vortex=False) # chooses to ignore vortex chanels and removes them from scan detector list
+mcascan(add_vortex=False) # chooses to ignore vortex channels and removes them from scan detector list
 
 ```
 
 <br>
 
-# Plot:
+# Plot
 
 ## Using basic mda plots:
 ```python
@@ -192,7 +192,7 @@ fit_centroid(n)        # to calculate avg centroid position during scan n
 ```
 
 
-## Using nData:
+## Using nData
 ```python
 from Macros_29id.IEX_nData import *
 
@@ -219,7 +219,7 @@ plt.show()
 ```
 
 
-## Using mdaFile:
+## Using mdaFile
 ```python
 mydata=mdaFile(1,3)   # loads mda scans 1 to 3
 mydata.update(4)      # loads another scan