diff --git a/bin/dm-ant b/bin/dm-ant index 633233f61559d776deabf304cddd5895ee5acb77..96f06205d88f6288b28b2d0c587e74bacfa86334 100755 --- a/bin/dm-ant +++ b/bin/dm-ant @@ -13,8 +13,8 @@ if [ -z $DM_ROOT_DIR ]; then fi DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` -export JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH -export ANT_HOME=$DM_SUPPORT_DIR/ant +export JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH +export ANT_HOME=$DM_OPT_DIR/ant export PATH=$ANT_HOME/bin:$PATH ant $@ diff --git a/etc/init.d/dm-glassfish b/etc/init.d/dm-glassfish index 2f1d0787a1cb646671e01a27b1d88a7377f6b00e..698d9df4a3a499248567fbaa1f558ddfbe885b3b 100755 --- a/etc/init.d/dm-glassfish +++ b/etc/init.d/dm-glassfish @@ -31,9 +31,9 @@ if [ ! -f ${DM_ENV_FILE} ]; then fi . ${DM_ENV_FILE} > /dev/null -export AS_JAVA=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH -DM_GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH -DERBY_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH/javadb/bin +export AS_JAVA=$DM_OPT_DIR/java/$DM_HOST_ARCH +DM_GLASSFISH_DIR=$DM_OPT_DIR/glassfish +DERBY_DIR=$DM_OPT_DIR/glassfish/javadb/bin DM_DAEMON_NAME=glassfish DM_DAEMON_CONTROL_CMD=$DM_GLASSFISH_DIR/bin/asadmin diff --git a/etc/init.d/dm-postgresql b/etc/init.d/dm-postgresql index 42857662f8bd71ce4400c76e2953603e38a6500c..31b4437963153c1ea49aed24647205a7282b88ef 100755 --- a/etc/init.d/dm-postgresql +++ b/etc/init.d/dm-postgresql @@ -20,7 +20,8 @@ ### END INIT INFO # PGVERSION is the full package version, e.g., 8.4.0 -PGVERSION=9.3.4 +#PGVERSION=9.3.4 +PGVERSION=9.6.1 # PGMAJORVERSION is major version, e.g., 8.4 (this should match PG_VERSION) PGMAJORVERSION=`echo "$PGVERSION" | sed 's/^\([0-9]*\.[0-9]*\).*$/\1/'` @@ -68,7 +69,7 @@ if [ ! -f $DM_SETUP_FILE ]; then fi . $DM_SETUP_FILE > /dev/null -PGROOT=$DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH +PGROOT=$DM_OPT_DIR/postgresql/$DM_HOST_ARCH PGENGINE=$PGROOT/bin #PGUSER=dm PGUSER=`whoami` diff --git a/sbin/dm_configure_web_portal.sh b/sbin/dm_configure_web_portal.sh index efa49c4ea9300bf74111086bd3a6ed0bc9548822..fa25a14f04c2e1858278be2895befaceefe5d491 100755 --- a/sbin/dm_configure_web_portal.sh +++ b/sbin/dm_configure_web_portal.sh @@ -41,8 +41,8 @@ DM_INSTALL_DIR=${DM_INSTALL_DIR:=$DM_ROOT_DIR/..} DM_SYSTEM_PASSWORD_FILE=${DM_INSTALL_DIR}/etc/${DM_SYSTEM_USER}.system.passwd DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH +JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH +GLASSFISH_DIR=$DM_OPT_DIR/glassfish export AS_JAVA=$JAVA_HOME ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin diff --git a/sbin/dm_create_db.sh b/sbin/dm_create_db.sh index 52b3b6c0c879c3f5da88d1dd2eca1a6ca4f1d9dd..7a1c8be20386b1ad769e5124bcfaec197b6413bd 100755 --- a/sbin/dm_create_db.sh +++ b/sbin/dm_create_db.sh @@ -69,7 +69,7 @@ fi echo "Using DB scripts directory: $DM_DB_SCRIPTS_DIR" -PG_DIR=$DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH +PG_DIR=$DM_OPT_DIR/postgresql/$DM_HOST_ARCH PG_CONTROL_SCRIPT=$DM_ROOT_DIR/etc/init.d/dm-postgresql PG_DATA_DIR=$PG_DIR/data PG_HBA_CONF=$PG_DATA_DIR/pg_hba.conf diff --git a/sbin/dm_deploy_web_portal.sh b/sbin/dm_deploy_web_portal.sh index 782b94f7b902a379e752694d5d2d871f68ae1c2b..bb401cd45292da624f697e949a44336501c01bf8 100755 --- a/sbin/dm_deploy_web_portal.sh +++ b/sbin/dm_deploy_web_portal.sh @@ -37,11 +37,11 @@ else echo "Deployment config file $deployConfigFile not found, using defaults" fi -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH +JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` DM_HOSTNAME=`hostname -f` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH +GLASSFISH_DIR=$DM_OPT_DIR/glassfish DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy DM_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist DM_BUILD_WAR_FILE=DmWebPortal.war diff --git a/sbin/dm_destroy_db.sh b/sbin/dm_destroy_db.sh index f2454dbcbace40127c0b4d341d296fb6cf4941c2..059e5222973b96ef20d1233d5fef40761232a2c0 100755 --- a/sbin/dm_destroy_db.sh +++ b/sbin/dm_destroy_db.sh @@ -35,7 +35,7 @@ if [ -z "$DM_SUPPORT_DIR" ]; then echo "Invalid environment file ${DM_ENV_FILE}: DM_SUPPORT_DIR is not defined." exit 1 fi -PG_DIR=$DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH +PG_DIR=$DM_OPT_DIR/postgresql/$DM_HOST_ARCH PG_CONTROL_SCRIPT=$DM_ROOT_DIR/etc/init.d/dm-postgresql PG_DATA_DIR=$PG_DIR/data PG_HBA_CONF=$PG_DATA_DIR/pg_hba.conf diff --git a/sbin/dm_unconfigure_web_portal.sh b/sbin/dm_unconfigure_web_portal.sh index accd877a232c34ce1aec836cbce826049f4216c7..de8836c9580d5060eba82d283a79bb5e02ab7f80 100755 --- a/sbin/dm_unconfigure_web_portal.sh +++ b/sbin/dm_unconfigure_web_portal.sh @@ -38,8 +38,8 @@ else fi DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH +JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH +GLASSFISH_DIR=$DM_OPT_DIR/glassfish export AS_JAVA=$JAVA_HOME ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin diff --git a/sbin/dm_undeploy_web_portal.sh b/sbin/dm_undeploy_web_portal.sh index 88cd23d305b6c56420883dd6fd144300d2388589..cf7f9069f17a3e5f8f023cad5569ee43bf3480b3 100755 --- a/sbin/dm_undeploy_web_portal.sh +++ b/sbin/dm_undeploy_web_portal.sh @@ -39,12 +39,12 @@ fi DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH +JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH +GLASSFISH_DIR=$DM_OPT_DIR/glassfish DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy DM_APP_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/applications/$DM_CONTEXT_ROOT DM_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist DM_WAR_FILE=$DM_CONTEXT_ROOT.war -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH export AS_JAVA=$JAVA_HOME ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin diff --git a/sbin/experiment_station.txt b/sbin/experiment_station.txt index 3150965691ae2107a5b5eb7e794fd73bd53a4a3e..c78a283ee53c9a2e12b1efd886059d89ba38ed96 100644 --- a/sbin/experiment_station.txt +++ b/sbin/experiment_station.txt @@ -10,6 +10,7 @@ "brown_aug14-files", 2 "brown_mar16-files", 2 "brown_oct12-files", 2 +"cinbiz_oct16-files", 2 "cchuang_jul16-files", 2 "cchuang_oct14-files", 2 "chuang_nov16-files", 2 @@ -27,9 +28,12 @@ "hufnagel_oct16-files", 2 "id1-test01-files", 2 "internal_aug16-files", 2 +"kaoumi_aug16-files", 2 "kaoumi_nov16-files", 2 +"kclan_apr16-files", 2 "kenneth_nov16-files", 2 "knauf_apr16-files", 2 +"knauf_dec16-files", 2 "kruzic_feb16-files", 2 "leyunwang_nov15-files", 2 "lind_jun16-files", 2 @@ -77,6 +81,7 @@ "stebner_jun16-files", 2 "stebner_nov16-files", 2 "stubbins_jun16-files", 2 +"styger_oct16-files", 2 "sun_jul16-files", 2 "sun_may14-files", 2 "sun_nov14-files", 2 diff --git a/sbin/experiment_station_1id.txt b/sbin/experiment_station_1id.txt index 673c85888d828e2d6691c0122b017e55f208e97a..ebdd3e2c805729f4c6f0af0b008cd898a43e1b7e 100644 --- a/sbin/experiment_station_1id.txt +++ b/sbin/experiment_station_1id.txt @@ -13,6 +13,7 @@ "cchuang_jul16-files", 2 "cchuang_oct14-files", 2 "chuang_nov16-files", 2 +"cinbiz_oct16-files", 2 "clausen_jul16-files", 2 "coratella_feb15-files", 2 "cp-test-001-files", 2 @@ -28,6 +29,8 @@ "id1-test01-files", 2 "internal_aug16-files", 2 "kaoumi_nov16-files", 2 +"kaoumi_aug16-files", 2 +"kclan_apr16-files", 2 "kenneth_nov16-files", 2 "knauf_apr16-files", 2 "kruzic_feb16-files", 2 @@ -77,6 +80,7 @@ "stebner_jun16-files", 2 "stebner_nov16-files", 2 "stubbins_jun16-files", 2 +"styger_oct16-files", 2 "sun_jul16-files", 2 "sun_may14-files", 2 "sun_nov14-files", 2 diff --git a/sbin/upgrade_experiment.sh b/sbin/upgrade_experiment.sh index b7e2188dc12e6b7178f64f2efcf209b94291e9ba..21370dfd7b90617627fb97a602b49125b8ad9cab 100755 --- a/sbin/upgrade_experiment.sh +++ b/sbin/upgrade_experiment.sh @@ -20,6 +20,7 @@ eval $cmd || exit 1 for e in $experimentList; do eName=`echo $e | sed "s?'??g" | sed "s?,??g"` echo "Working on experiment $eName" + echo "Executing: cat $EXPERIMENT_STATION_FILE | grep $eName | head -1 | cut -f2 -d','" stationId=`cat $EXPERIMENT_STATION_FILE | grep $eName | head -1 | cut -f2 -d','` if [ -z "$stationId" ]; then stationId=1 # test station id diff --git a/setup.sh b/setup.sh index ba2bb4f5ade39683e52e3ecd9495afa87ac601bd..9600567ac383cc58fbced29cc77fadda21e392d2 100644 --- a/setup.sh +++ b/setup.sh @@ -35,13 +35,14 @@ if [ -z $DM_SUPPORT_DIR ]; then export DM_SUPPORT_DIR=`pwd` fi fi + if [ ! -d $DM_SUPPORT_DIR ]; then echo "ERROR: $DM_SUPPORT_DIR directory does not exist. Developers should point DM_SUPPORT_DIR to the desired area." unset DM_SUPPORT_DIR return 1 -else - export DM_GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH fi +export DM_OPT_DIR=$DM_SUPPORT_DIR/opt +export DM_GLASSFISH_DIR=$DM_OPT_DIR/glassfish # Add to path only if directory exists. @@ -53,11 +54,11 @@ prependPathIfDirExists() { } # Setup path and other variables -prependPathIfDirExists $DM_SUPPORT_DIR/node/$DM_HOST_ARCH/bin -prependPathIfDirExists $DM_SUPPORT_DIR/mongodb/$DM_HOST_ARCH/bin -prependPathIfDirExists $DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH/bin -prependPathIfDirExists $DM_SUPPORT_DIR/java/$DM_HOST_ARCH/bin -prependPathIfDirExists $DM_SUPPORT_DIR/ant/bin +prependPathIfDirExists $DM_OPT_DIR/node/$DM_HOST_ARCH/bin +prependPathIfDirExists $DM_OPT_DIR/mongodb/$DM_HOST_ARCH/bin +prependPathIfDirExists $DM_OPT_DIR/postgresql/$DM_HOST_ARCH/bin +prependPathIfDirExists $DM_OPT_DIR/java/$DM_HOST_ARCH/bin +prependPathIfDirExists $DM_OPT_DIR/ant/bin prependPathIfDirExists $DM_ROOT_DIR/bin PATH=.:$PATH export PATH @@ -72,7 +73,7 @@ export LD_LIBRARY_PATH # Setup python path. # Check if we have local python if [ -z $DM_PYTHON_DIR ]; then - pythonDir=$DM_SUPPORT_DIR/python/$DM_HOST_ARCH + pythonDir=$DM_OPT_DIR/python/$DM_HOST_ARCH else pythonDir=$DM_PYTHON_DIR fi @@ -93,7 +94,7 @@ export PYTHONPATH # Setup postgres. if [ -z $DM_POSTGRESQL_DIR ]; then - postgresqlDir=$DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH + postgresqlDir=$DM_OPT_DIR/postgresql/$DM_HOST_ARCH else postgresqlDir=$DM_POSTGRESQL_DIR fi @@ -106,7 +107,7 @@ if [ -d $postgresqlDir ]; then fi # Setup oracle libraries. -oracleDir=$DM_SUPPORT_DIR/opt/oracle-client/$DM_HOST_ARCH +oracleDir=$DM_OPT_DIR/oracle-client/$DM_HOST_ARCH if [ -d $oracleDir ]; then LD_LIBRARY_PATH=$oracleDir:$LD_LIBRARY_PATH PATH=$oracleDir:$PATH diff --git a/src/java/DmWebPortal/nbproject/private/private.properties b/src/java/DmWebPortal/nbproject/private/private.properties index 6bcbd12759e9046737b234985c155100130c01ea..2d526986519c0ff734f5c6d3d479cc43f2833d0e 100644 --- a/src/java/DmWebPortal/nbproject/private/private.properties +++ b/src/java/DmWebPortal/nbproject/private/private.properties @@ -1,7 +1,2 @@ -deploy.ant.properties.file=/home/sveseli/.netbeans/8.2/config/GlassFishEE6/Properties/gfv3-334529135.properties -j2ee.platform.is.jsr109=true -j2ee.server.domain=/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish/domains/domain1 -j2ee.server.home=/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish -j2ee.server.instance=[/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish:/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish/domains/domain1]deployer:gfv3ee6wc:localhost:4848 -j2ee.server.middleware=/home/sveseli/Work/netbeans/glassfish-4.1.1 -user.properties.file=/home/sveseli/.netbeans/8.2/build.properties +j2ee.server.home=/home/dm/support/opt/glassfish/glassfish +j2ee.server.middleware=/home/dm/support/opt/glassfish diff --git a/src/java/DmWebPortal/nbproject/private/private.properties.orig b/src/java/DmWebPortal/nbproject/private/private.properties.orig deleted file mode 100644 index 817c2c02d8d510c68178e339cc16cfc4ebf03ca8..0000000000000000000000000000000000000000 --- a/src/java/DmWebPortal/nbproject/private/private.properties.orig +++ /dev/null @@ -1,10 +0,0 @@ -deploy.ant.properties.file=/home/sveseli/.netbeans/8.2/config/GlassFishEE6/Properties/gfv3-334529135.properties -j2ee.platform.is.jsr109=true -j2ee.server.domain=/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish/domains/domain1 -j2ee.server.home=/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish -j2ee.server.instance=[/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish:/home/sveseli/Work/netbeans/glassfish-4.1.1/glassfish/domains/domain1]deployer:gfv3ee6wc:localhost:4848 -j2ee.server.middleware=/home/sveseli/Work/netbeans/glassfish-4.1.1 -javac.debug=true -javadoc.preview=true -selected.browser=default -user.properties.file=/home/sveseli/.netbeans/8.2/build.properties diff --git a/src/java/DmWebPortal/src/java/dm.portal.properties b/src/java/DmWebPortal/src/java/dm.portal.properties index ffee7ae6acc58f319435f9f147e541b384253c45..04752ec403b111c5152e9d58be501fbb22a43988 100644 --- a/src/java/DmWebPortal/src/java/dm.portal.properties +++ b/src/java/DmWebPortal/src/java/dm.portal.properties @@ -5,6 +5,6 @@ dm.portal.ldapUrl=ldaps://dmid-vm.xray.aps.anl.gov:636 dm.portal.ldapDnString=uid=USERNAME,ou=DM,ou=People,o=aps.anl.gov,dc=aps,dc=anl,dc=gov -dm.dsWebService.url=https://xstor-devel:22236/dm +dm.dsWebService.url=https://apsgpfs08:22236/dm dm.system.user=dm -dm.system.passwordFile=DM_INSTALL_DIR/etc/DM_SYSTEM_USER.system.passwd \ No newline at end of file +dm.system.passwordFile=DM_INSTALL_DIR/etc/DM_SYSTEM_USER.system.passwd diff --git a/src/python/dm/__init__.py b/src/python/dm/__init__.py index 2ac2c5502f6a002cb7e7603af888cb0bcba8d64f..ccd277af3e5dadbbeacb83a19043b3180b23c2d2 100644 --- a/src/python/dm/__init__.py +++ b/src/python/dm/__init__.py @@ -1 +1 @@ -__version__ = "0.16 (2017.01.05)" +__version__ = "1.0 (2017.01.23)" diff --git a/src/python/dm/aps_user_db/cli/updateUserFromApsDbCli.py b/src/python/dm/aps_user_db/cli/updateUserFromApsDbCli.py index eed07df52db1c4a962a9f8071b8f22e764143579..8476e3c36ba1cade22a5bc510d15ab355efa240d 100755 --- a/src/python/dm/aps_user_db/cli/updateUserFromApsDbCli.py +++ b/src/python/dm/aps_user_db/cli/updateUserFromApsDbCli.py @@ -23,7 +23,7 @@ class UpdateUserFromApsDbCli(DmCli): if configFile is None: raise InvalidRequest('Config file must be provided.') if not os.path.exists(configFile): - raise InvalidArgument('Invalid config file: %s.', configFile) + raise InvalidArgument('Invalid config file: %s.' % configFile) def getBadge(self): return self.options.badge diff --git a/src/python/dm/aps_user_db/cli/updateUsersFromApsDbCli.py b/src/python/dm/aps_user_db/cli/updateUsersFromApsDbCli.py index afc0e615e3f2fbb1081a674c793dd849e0235af6..6c7c347c75dbedcc65dadc2105a42d1f4a062fe7 100755 --- a/src/python/dm/aps_user_db/cli/updateUsersFromApsDbCli.py +++ b/src/python/dm/aps_user_db/cli/updateUsersFromApsDbCli.py @@ -27,7 +27,7 @@ class UpdateUsersFromApsDbCli(DmCli): if configFile is None: raise InvalidRequest('Config file must be provided.') if not os.path.exists(configFile): - raise InvalidArgument('Invalid config file: %s.', configFile) + raise InvalidArgument('Invalid config file: %s.' % configFile) def runCommand(self): self.parseArgs(usage="""