diff --git a/etc/init.d/dm-ds-services b/etc/init.d/dm-ds-services index 51d71fee22c0a868263cd0993a359908c2f65f00..e3fe9847ab0c6ecf68b1eb89df32746c9f59294b 100755 --- a/etc/init.d/dm-ds-services +++ b/etc/init.d/dm-ds-services @@ -8,8 +8,8 @@ MY_FILE=`readlink -f $0` && MY_DIR=`dirname $MY_FILE` # The list below defines order of starting/stopping services #startList="postgresql glassfish ds-web-service" #stopList="ds-web-service glassfish postgresql" -startList="glassfish ds-web-service aps-db-web-service" -stopList="aps-db-web-service ds-web-service glassfish" +startList="payara ds-web-service aps-db-web-service" +stopList="aps-db-web-service ds-web-service payara" restartList=$startList statusList=$startList diff --git a/etc/init.d/dm-payara b/etc/init.d/dm-payara new file mode 100755 index 0000000000000000000000000000000000000000..947460e30f8c561d67dd8654d2ff92fccddbbf27 --- /dev/null +++ b/etc/init.d/dm-payara @@ -0,0 +1,104 @@ +#! /bin/sh +### BEGIN INIT INFO +# Provides: payara +# Required-Start: $remote_fs $network $syslog +# Required-Stop: $remote_fs $network $syslog +# Default-Start: 2 3 4 5 +# Default-Stop: 0 1 6 +# Short-Description: Starts Payara +# Description: Starts Payara application server +### END INIT INFO + +# Source function library. +. /etc/rc.d/init.d/functions + +# Source networking configuration. +. /etc/sysconfig/network + +# Set root to default if needed. +#MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` +MY_FILE=`readlink -f $0` && MY_DIR=`dirname $MY_FILE` +if [ -z "${DM_ROOT_DIR}" ]; then + DM_ROOT_DIR=$MY_DIR/../.. +fi + +# Source environment file. +DM_USER=`id -nu` +DM_HOST=`hostname -s` +DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh +if [ ! -f ${DM_ENV_FILE} ]; then + echo "Environment file ${DM_ENV_FILE} does not exist." + exit 2 +fi +. ${DM_ENV_FILE} > /dev/null + +export AS_JAVA=$DM_OPT_DIR/java/$DM_HOST_ARCH +DM_PAYARA_DIR=$DM_OPT_DIR/payara +DERBY_DIR=$DM_OPT_DIR/payara/javadb/bin + +DM_DAEMON_NAME=payara +DM_DAEMON_CONTROL_CMD=$DM_PAYARA_DIR/bin/asadmin +DM_DAEMON_START_ARGS="start-domain domain1" +DM_DAEMON_STOP_ARGS="stop-domain domain1" +DM_DAEMON_STATUS_CMDS="uptime list-domains list-applications list-jdbc-resources" + +start() { + echo -n $"Starting ${DM_DAEMON_NAME}: " + # Check if we're a privileged user + if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then + su -m -c "${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER} + else + ${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_START_ARGS} + fi + RETVAL=$? + [ $RETVAL -eq 0 ] && success $"${DM_DAEMON_NAME} startup" || failure $"${DM_DAEMON_NAME} startup" + echo +} + +stop() { + echo -n $"Stopping ${DM_DAEMON_NAME}: " + # Check if we're a privileged user + if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then + su -m -c "${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_STOP_ARGS}" ${DM_USER} + else + ${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_STOP_ARGS} + fi + RETVAL=$? + [ $RETVAL -eq 0 ] && success $"${DM_DAEMON_NAME} shutdown" || failure $"${DM_DAEMON_NAME} shutdown" + echo +} + +status() { + # Check if we're a privileged user + if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then + for cmd in ${DM_DAEMON_STATUS_CMDS}; do + su -m -c "${DM_DAEMON_CONTROL_CMD} ${cmd}" ${DM_USER} + done + else + for cmd in ${DM_DAEMON_STATUS_CMDS}; do + ${DM_DAEMON_CONTROL_CMD} ${cmd} + done + fi +} + +case "$1" in + start) + start + ;; + stop) + stop + ;; + restart) + stop + start + ;; + status) + status + ;; + *) + echo "Usage: $0 {start|stop|restart|status}" + exit 1 + ;; +esac + + diff --git a/sbin/dm_backup.sh b/sbin/dm_backup.sh index 7e55ee864775a474b6c75bb76482154a7b01ae9f..be2528173c80487fdae47102abca02421a6d1bf7 100755 --- a/sbin/dm_backup.sh +++ b/sbin/dm_backup.sh @@ -114,7 +114,7 @@ rm -f $processingFile # Backup web app #echo "Backing up $DM_DB_NAME web app" -#rsync -arlvP $DM_SUPPORT_DIR/opt/glassfish/glassfish/domains/domain1/autodeploy/$DM_DB_NAME.war $DM_BACKUP_DIR +#rsync -arlvP $DM_SUPPORT_DIR/opt/payara/glassfish/domains/domain1/autodeploy/$DM_DB_NAME.war $DM_BACKUP_DIR cleanup echo "Backup of DB $DM_DB_NAME is done." diff --git a/sbin/dm_configure_web_portal.sh b/sbin/dm_configure_web_portal.sh index fa25a14f04c2e1858278be2895befaceefe5d491..6665b06ed8bb5613d9c07859f012bf4559cb5492 100755 --- a/sbin/dm_configure_web_portal.sh +++ b/sbin/dm_configure_web_portal.sh @@ -42,10 +42,10 @@ DM_SYSTEM_PASSWORD_FILE=${DM_INSTALL_DIR}/etc/${DM_SYSTEM_USER}.system.passwd DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH -GLASSFISH_DIR=$DM_OPT_DIR/glassfish +PAYARA_DIR=$DM_OPT_DIR/payara export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin +ASADMIN_CMD=$PAYARA_DIR/bin/asadmin DM_DB_HOST=${DM_DB_HOST:=localhost} DM_DB_PORT=${DM_DB_PORT:=11136} @@ -57,7 +57,7 @@ DM_DOMAIN=domain1 # copy db driver echo "Copying db driver" -rsync -ar $DM_ROOT_DIR/src/java/DmWebPortal/lib/postgresql*.jdbc41.jar $GLASSFISH_DIR/glassfish/domains/${DM_DOMAIN}/lib/ext +rsync -ar $DM_ROOT_DIR/src/java/DmWebPortal/lib/postgresql*.jdbc41.jar $PAYARA_DIR/glassfish/domains/${DM_DOMAIN}/lib/ext # Check password from file passwordFile=$DM_INSTALL_DIR/etc/$DM_DB_NAME.db.passwd @@ -66,7 +66,7 @@ if [ -f $passwordFile ]; then fi # restart server -echo "Restarting glassfish" +echo "Restarting payara" $ASADMIN_CMD stop-domain ${DM_DOMAIN} $ASADMIN_CMD start-domain ${DM_DOMAIN} @@ -78,6 +78,9 @@ $ASADMIN_CMD create-jdbc-connection-pool --datasourceclassname org.postgresql.ds echo "Creating JDBC resource $DM_DATA_SOURCE" $ASADMIN_CMD create-jdbc-resource --connectionpoolid ${DM_DB_POOL} ${DM_DATA_SOURCE} +# Remove unsecure access on port 8080 +$ASADMIN_CMD delete-http-listener "http-listener-1" + # test the connection settings echo "Testing connection" $ASADMIN_CMD ping-connection-pool $DM_DB_POOL || exit 1 diff --git a/sbin/dm_deploy_web_portal.sh b/sbin/dm_deploy_web_portal.sh index 394b48759bfbd846b2b58b0135f494168080ba44..24f51257fc021afc9930b6d682ce8f7b988b6029 100755 --- a/sbin/dm_deploy_web_portal.sh +++ b/sbin/dm_deploy_web_portal.sh @@ -42,8 +42,8 @@ DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` DM_HOSTNAME=`hostname -f` DM_DATE=`date +%Y.%m.%d` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} -GLASSFISH_DIR=$DM_OPT_DIR/glassfish -DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy +PAYARA_DIR=$DM_OPT_DIR/payara +DM_DEPLOY_DIR=$PAYARA_DIR/glassfish/domains/domain1/autodeploy DM_PORTAL_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist DM_BASE_DIST_DIR=$DM_ROOT_DIR/src/java/DmBase/dist DM_API_DIST_DIR=$DM_ROOT_DIR/src/java/DmApi/dist @@ -116,7 +116,7 @@ cd ../.. jar cf ../$DM_WAR_FILE * export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin +ASADMIN_CMD=$PAYARA_DIR/bin/asadmin # copy war file echo "Copying war file $DM_PORTAL_DIST_DIR/$DM_WAR_FILE to $DM_DEPLOY_DIR" diff --git a/sbin/dm_unconfigure_web_portal.sh b/sbin/dm_unconfigure_web_portal.sh index de8836c9580d5060eba82d283a79bb5e02ab7f80..99d3ba7e4d98d9dea2ea8e4396fd70bd90339ac5 100755 --- a/sbin/dm_unconfigure_web_portal.sh +++ b/sbin/dm_unconfigure_web_portal.sh @@ -39,17 +39,17 @@ fi DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH -GLASSFISH_DIR=$DM_OPT_DIR/glassfish +PAYARA_DIR=$DM_OPT_DIR/payara export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin +ASADMIN_CMD=$PAYARA_DIR/bin/asadmin DM_DB_POOL=postgresql_${DM_DB_NAME}_DbPool DM_DATA_SOURCE=${DM_DB_NAME}_DataSource DM_DOMAIN=domain1 # restart server -echo "Restarting glassfish" +echo "Restarting payara" $ASADMIN_CMD stop-domain ${DM_DOMAIN} $ASADMIN_CMD start-domain ${DM_DOMAIN} diff --git a/sbin/dm_undeploy_web_portal.sh b/sbin/dm_undeploy_web_portal.sh index cf7f9069f17a3e5f8f023cad5569ee43bf3480b3..1efdd8458b0dd835b4b31b30ec79b77868c5980c 100755 --- a/sbin/dm_undeploy_web_portal.sh +++ b/sbin/dm_undeploy_web_portal.sh @@ -40,14 +40,14 @@ fi DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} JAVA_HOME=$DM_OPT_DIR/java/$DM_HOST_ARCH -GLASSFISH_DIR=$DM_OPT_DIR/glassfish -DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy -DM_APP_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/applications/$DM_CONTEXT_ROOT +PAYARA_DIR=$DM_OPT_DIR/payara +DM_DEPLOY_DIR=$PAYARA_DIR/glassfish/domains/domain1/autodeploy +DM_APP_DIR=$PAYARA_DIR/glassfish/domains/domain1/applications/$DM_CONTEXT_ROOT DM_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist DM_WAR_FILE=$DM_CONTEXT_ROOT.war export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin +ASADMIN_CMD=$PAYARA_DIR/bin/asadmin # remove war file from autodeploy directory echo "Removing war file $DM_DEPLOY_DIR/$DM_WAR_FILE" @@ -62,7 +62,7 @@ else fi # restart server -echo "Restarting glassfish" +echo "Restarting payara" $ASADMIN_CMD stop-domain ${DM_DOMAIN} $ASADMIN_CMD start-domain ${DM_DOMAIN} diff --git a/setup.csh b/setup.csh index 31559cec269b91e522fe28f18d68bb35016ce2ac..b8e5abd586fd96d392329b038bfb79e2729e575c 100644 --- a/setup.csh +++ b/setup.csh @@ -44,7 +44,7 @@ if ( ! -d $DM_SUPPORT_DIR ) then exit 1 endif setenv DM_OPT_DIR $DM_SUPPORT_DIR/opt -setenv DM_GLASSFISH_DIR $DM_OPT_DIR/glassfish +setenv DM_GLASSFISH_DIR $DM_OPT_DIR/payara # Setup path and other variables setenv PATH ${DM_OPT_DIR}/node/bin:${PATH} diff --git a/setup.sh b/setup.sh index 99755495e427e48fcf7f81b3ca9ff031a1e1250a..6b09cf9ea215e4ae3ccac29f6dae702fabefb134 100644 --- a/setup.sh +++ b/setup.sh @@ -42,7 +42,7 @@ if [ ! -d $DM_SUPPORT_DIR ]; then return 1 fi export DM_OPT_DIR=$DM_SUPPORT_DIR/opt -export DM_GLASSFISH_DIR=$DM_OPT_DIR/glassfish +export DM_GLASSFISH_DIR=$DM_OPT_DIR/payara # Add to path only if directory exists. diff --git a/src/java/DmBase/nbproject/project.properties b/src/java/DmBase/nbproject/project.properties index 253a8928becc64ab7e42fb0d420a4d69db8e08a6..123982548b0c5ad6603a0a8230d3e1cac91d99f9 100644 --- a/src/java/DmBase/nbproject/project.properties +++ b/src/java/DmBase/nbproject/project.properties @@ -32,12 +32,14 @@ excludes= file.reference.gson-2.3.1.jar=../lib/gson-2.3.1.jar file.reference.log4j-1.2.17.jar=../lib/log4j-1.2.17.jar file.reference.primefaces-6.0.jar=../lib/primefaces-6.0.jar +file.reference.jaxb-osgi.jar=/local/DataManagement/support/opt/payara/glassfish/modules/jaxb-osgi.jar includes=** jar.compress=false javac.classpath=\ ${file.reference.log4j-1.2.17.jar}:\ ${file.reference.gson-2.3.1.jar}:\ - ${file.reference.primefaces-6.0.jar} + ${file.reference.primefaces-6.0.jar}:\ + ${file.reference.jaxb-osgi.jar} # Space-separated list of extra javac options javac.compilerargs= javac.deprecation=false diff --git a/src/java/DmWebPortal/nbproject/project.properties b/src/java/DmWebPortal/nbproject/project.properties index 8782235871851de23a029e7374f6baaee0636edb..4b807418c429ea163533a0e5ea9a4a730bc28735 100644 --- a/src/java/DmWebPortal/nbproject/project.properties +++ b/src/java/DmWebPortal/nbproject/project.properties @@ -43,7 +43,7 @@ j2ee.compile.on.save=true j2ee.copy.static.files.on.save=true j2ee.deploy.on.save=true j2ee.platform=1.7-web -j2ee.platform.classpath=${j2ee.server.home}/modules/endorsed/javax.annotation-api.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent-api.jar:${j2ee.server.home}/modules/javax.security.auth.message-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl.jar:${j2ee.server.home}/modules/javax.enterprise.deploy-api.jar:${j2ee.server.home}/modules/javax.xml.registry-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl-api.jar:${j2ee.server.home}/modules/javax.transaction-api.jar:${j2ee.server.home}/modules/javax.management.j2ee-api.jar:${j2ee.server.home}/modules/javax.interceptor-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp-api.jar:${j2ee.server.home}/modules/javax.security.jacc-api.jar:${j2ee.server.home}/modules/javax.websocket-api.jar:${j2ee.server.home}/modules/weld-osgi-bundle.jar:${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/javax.resource-api.jar:${j2ee.server.home}/modules/javax.batch-api.jar:${j2ee.server.home}/modules/javax.ws.rs-api.jar:${j2ee.server.home}/modules/bean-validator.jar:${j2ee.server.home}/modules/javax.xml.rpc-api.jar:${j2ee.server.home}/modules/javax.servlet-api.jar:${j2ee.server.home}/modules/javax.persistence.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jar:${j2ee.server.home}/modules/javax.jms-api.jar:${j2ee.server.home}/modules/javax.ejb-api.jar:${j2ee.server.home}/modules/javax.inject.jar:${j2ee.server.home}/modules/javax.faces.jar:${j2ee.server.home}/modules/javax.mail.jar:${j2ee.server.home}/modules/javax.json.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/javax.el.jar:${j2ee.server.home}/modules/cdi-api.jar:${j2ee.server.middleware}/mq/lib/jaxm-api.jar +j2ee.platform.classpath=${j2ee.server.home}/modules/endorsed/javax.annotation-api.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent-api.jar:${j2ee.server.home}/modules/javax.security.auth.message-api.jar:${j2ee.server.home}/modules/javax.enterprise.concurrent.jar:${j2ee.server.home}/modules/javax.enterprise.deploy-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl-api.jar:${j2ee.server.home}/modules/javax.management.j2ee-api.jar:${j2ee.server.home}/modules/javax.security.jacc-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jstl.jar:${j2ee.server.home}/modules/javax.xml.registry-api.jar:${j2ee.server.home}/modules/javax.transaction-api.jar:${j2ee.server.home}/modules/javax.interceptor-api.jar:${j2ee.server.home}/modules/javax.servlet.jsp-api.jar:${j2ee.server.home}/modules/javax.websocket-api.jar:${j2ee.server.home}/modules/javax.resource-api.jar:${j2ee.server.home}/modules/javax.xml.rpc-api.jar:${j2ee.server.home}/modules/javax.servlet-api.jar:${j2ee.server.home}/modules/javax.persistence.jar:${j2ee.server.home}/modules/javax.servlet.jsp.jar:${j2ee.server.home}/modules/weld-osgi-bundle.jar:${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/javax.batch-api.jar:${j2ee.server.home}/modules/javax.ws.rs-api.jar:${j2ee.server.home}/modules/bean-validator.jar:${j2ee.server.home}/modules/javax.jms-api.jar:${j2ee.server.home}/modules/javax.ejb-api.jar:${j2ee.server.home}/modules/javax.inject.jar:${j2ee.server.home}/modules/javax.faces.jar:${j2ee.server.home}/modules/javax.mail.jar:${j2ee.server.home}/modules/javax.json.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/javax.el.jar:${j2ee.server.home}/modules/cdi-api.jar:${j2ee.server.home}/modules/jakarta.faces.jar:${j2ee.server.home}/modules/validation-api.jar:${j2ee.server.middleware}/mq/lib/jaxm-api.jar j2ee.platform.embeddableejb.classpath=${j2ee.server.home}/lib/embedded/glassfish-embedded-static-shell.jar j2ee.platform.wscompile.classpath=${j2ee.server.home}/modules/webservices-osgi.jar j2ee.platform.wsgen.classpath=${j2ee.server.home}/modules/webservices-osgi.jar:${j2ee.server.home}/modules/endorsed/webservices-api-osgi.jar:${j2ee.server.home}/modules/jaxb-osgi.jar:${j2ee.server.home}/modules/endorsed/jaxb-api.jar