diff --git a/bin/dm-add-user-system-role b/bin/dm-add-user-system-role index 0a8eb23891d42db438c62bdbffe34d49fe208f1a..74e305d4dafe5183a6f9f66421d15e8862d8284d 100755 --- a/bin/dm-add-user-system-role +++ b/bin/dm-add-user-system-role @@ -12,6 +12,8 @@ if [ -z $DM_ROOT_DIR ]; then source $setupFile > /dev/null fi -$DM_ROOT_DIR/src/python/dm/common/db/cli/addUserSystemRoleCli.py $@ +#$DM_ROOT_DIR/src/python/dm/common/db/cli/addUserSystemRoleCli.py $@ +$DM_ROOT_DIR/src/python/dm/ds_web_service/cli/addUserSystemRoleCli.py $@ + diff --git a/bin/dm-delete-user-system-role b/bin/dm-delete-user-system-role new file mode 100755 index 0000000000000000000000000000000000000000..e93b23abd5f3d335fa5b05e1276337f2582e2aaa --- /dev/null +++ b/bin/dm-delete-user-system-role @@ -0,0 +1,19 @@ +#!/bin/sh + +# Run command + +if [ -z $DM_ROOT_DIR ]; then + cd `dirname $0` && myDir=`pwd` + setupFile=$myDir/../setup.sh + if [ ! -f $setupFile ]; then + echo "Cannot find setup file: $setupFile" + exit 1 + fi + source $setupFile > /dev/null +fi + +#$DM_ROOT_DIR/src/python/dm/common/db/cli/deleteUserSystemRoleCli.py $@ +$DM_ROOT_DIR/src/python/dm/ds_web_service/cli/deleteUserSystemRoleCli.py $@ + + + diff --git a/sbin/create_dm_db.sh b/sbin/create_dm_db.sh deleted file mode 100755 index 319b532f6294f4e1ba188478b1c842a20fadc454..0000000000000000000000000000000000000000 --- a/sbin/create_dm_db.sh +++ /dev/null @@ -1,224 +0,0 @@ -#!/bin/sh - -# -# Script used for creating DM database -# Deployment configuration can be set in etc/$DM_DB_NAME.deploy.conf file -# -# Usage: -# -# $0 [DM_DB_NAME [DM_DB_SCRIPTS_DIR]] -# - -DM_DB_NAME=dm -DM_DB_USER=dm -DM_DB_PASSWORD=dm -DM_DB_HOST=127.0.0.1 -DM_DB_PORT=11136 -DM_DB_ADMIN_USER=postgres -DM_DB_ADMIN_HOSTS="127.0.0.1 bluegill1.aps.anl.gov visa%.aps.anl.gov" -DM_DB_ADMIN_PASSWORD= -DM_DB_CHARACTER_SET=utf8 - - -CURRENT_DIR=`pwd` -MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` -cd $CURRENT_DIR - -if [ -z "${DM_ROOT_DIR}" ]; then - DM_ROOT_DIR=$MY_DIR/.. -fi -DM_INSTALL_DIR=${DM_INSTALL_DIR:=$DM_ROOT_DIR/..} -DM_SQL_DIR=$DM_ROOT_DIR/db -DM_ETC_DIR=$DM_INSTALL_DIR/etc -DM_RUN_DIR=$DM_INSTALL_DIR/var/run -DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh -if [ ! -f ${DM_ENV_FILE} ]; then - echo "Environment file ${DM_ENV_FILE} does not exist." - exit 1 -fi -. ${DM_ENV_FILE} > /dev/null - -# DM_SUPPORT_DIR should now be defined. -if [ -z "$DM_SUPPORT_DIR" ]; then - echo "Invalid environment file ${DM_ENV_FILE}: DM_SUPPORT_DIR is not defined." - exit 1 -fi -PG_DIR=$DM_SUPPORT_DIR/postgresql/$DM_HOST_ARCH -PG_CONTROL_SCRIPT=$DM_ROOT_DIR/etc/init.d/dm-postgresql -PG_DATA_DIR=$PG_DIR/data -PG_HBA_CONF=$PG_DATA_DIR/pg_hba.conf -DB_LOCK_FILE=${DM_RUN_DIR}/${DM_DB_NAME}.db.lock -DB_CREATE_SCRIPT=${DM_ROOT_DIR}/db/create_${DM_DB_NAME}_db.sql - -# Use first argument as db name, if provided -if [ ! -z "$1" ]; then - DM_DB_NAME=$1 -fi -echo "Using DB name: $DM_DB_NAME" - -# Look for deployment file in etc directory, and use it to override -# default entries -deployConfigFile=$DM_ROOT_DIR/etc/${DM_DB_NAME}.deploy.conf -if [ -f $deployConfigFile ]; then - echo "Using deployment config file: $deployConfigFile" - . $deployConfigFile -else - echo "Deployment config file $deployConfigFile not found, using defaults" -fi - -# Second argument overrides directory with db population scripts -DM_DB_SCRIPTS_DIR=${DM_DB_SCRIPTS_DIR:=$DM_SQL_DIR} -if [ ! -z "$2" ]; then - DM_DB_SCRIPTS_DIR=$2 -fi -if [ ! -d $DM_DB_SCRIPTS_DIR ]; then - echo "DB Scripts directory $DM_DB_SCRIPTS_DIR does not exist." - exit 1 -fi - -echo "Using DB scripts directory: $DM_DB_SCRIPTS_DIR" - -execute() { - msg="$@" - if [ ! -z "$DM_DB_ADMIN_PASSWORD" ]; then - sedCmd="s?$DM_DB_ADMIN_PASSWORD?\\*\\*\\*\\*\\*\\*?g" - echo "Executing: $@" | sed -e $sedCmd - else - echo "Executing: $@" - fi - eval "$@" -} - -createDb() { - if [ -f $DB_LOCK_FILE ]; then - echo "Database lock file $DB_LOCK_FILE already exists, will not proceed." - return 1 - fi - echo "Creating database $DM_DB_NAME" - ${PG_DIR}/bin/createdb -U $DM_DB_USER -h $DM_DB_HOST -p $DM_DB_PORT $DM_DB_NAME || return 1 - echo "Creating database schema for $DM_DB_NAME" - ${PG_DIR}/bin/psql -U $DM_DB_USER -h $DM_DB_HOST -p $DM_DB_PORT -d $DM_DB_NAME -f $DB_CREATE_SCRIPT || return 1 - touch $DB_LOCK_FILE -} - -createDbUser() { - _dbUser=$1 - shift 1 - _createFlags=$@ - - # create user - ${PG_DIR}/bin/createuser -h $DM_DB_HOST -p $DM_DB_PORT $_createFlags $_dbUser || return 1 -} - -modifyDbUserPassword() { - _dbUser=$1 - _dbPassword=$2 - _tmpFile=/tmp/$$.sql - echo "alter user $_dbUser with password '$_dbPassword';" > $_tmpFile - $PG_DIR/bin/psql -h $DM_DB_HOST -p $DM_DB_PORT -d postgres -f $_tmpFile - rm -f $_tmpFile -} - -# Check for failed earlier attempt -if [ -f $PG_HBA_CONF.orig ]; then - echo "File $PG_HBA_CONF.orig exists, refusing to proceed." - exit 1 -fi - -# Initialize db if needed -dbAction=restart -createDbRootUser=false -if [ ! -f $PG_HBA_CONF ]; then - $PG_CONTROL_SCRIPT initdb || exit 1 - dbAction=start - createDbRootUser=true -fi - -# Modify db permissions, restart db. -echo "Modifying db access permissions" -mv $PG_HBA_CONF $PG_HBA_CONF.orig -cat $PG_HBA_CONF.orig | sed 's?host.*all.*all.*127.*?host all all 127.0.0.1/32 trust?g' | sed 's?host.*all.*all.*::1/128.*?host all all ::1/128 trust?g' > $PG_HBA_CONF || exit 1 -echo "Restarting database server" -$PG_CONTROL_SCRIPT $dbAction - -# Create db root user if needed -sttyOrig=`stty -g` -if [ $createDbRootUser = "true" ]; then - # Read db password if needed - if [ -z "$DM_DB_ADMIN_PASSWORD" ]; then - stty -echo - read -p "Enter DB password for the $DM_DB_ADMIN_USER (DB root) user: " DM_DB_ADMIN_PASSWORD - echo - stty $sttyOrig - fi - - # Create postgres user - echo "Creating $DM_DB_ADMIN_USER" - createDbUser $DM_DB_ADMIN_USER -E -s || exit 1 - modifyDbUserPassword $DM_DB_ADMIN_USER $DM_DB_ADMIN_PASSWORD || exit 1 -fi - -# Read user db password if needed -if [ -z "$DM_DB_USER_PASSWORD" ]; then - stty -echo - read -p "Enter DB password for the $DM_DB_USER user: " DM_DB_USER_PASSWORD - echo - stty $sttyOrig -fi - -# Create db user -echo "Creating $DM_DB_USER" -createDbUser $DM_DB_USER -E -d || exit 1 -modifyDbUserPassword $DM_DB_USER $DM_DB_USER_PASSWORD || exit 1 - -# Create db password file -mkdir -p $DM_ETC_DIR -mkdir -p $DM_RUN_DIR -passwordFile=$DM_ETC_DIR/$DM_DB_NAME.db.passwd -echo $DM_DB_USER_PASSWORD > $passwordFile -chmod 600 $passwordFile - -# Create db -echo "Creating database: $DM_DB_NAME" -createDb || exit 1 - -# populate db -cd $CURRENT_DIR && cd $DM_DB_SCRIPTS_DIR -DM_DB_TABLES="\ - experiment_type \ - user_info \ - role_type \ - user_system_role \ - policy_type \ - policy_property \ - allowed_policy_value \ - users_last_update -" -for dbTable in $DM_DB_TABLES; do - dbFile=populate_$dbTable.sql - if [ -f $dbFile ]; then - echo "Populating $dbTable using $dbFile script" - execute ${PG_DIR}/bin/psql -U $DM_DB_USER -h $DM_DB_HOST -p $DM_DB_PORT -d $DM_DB_NAME -f $dbFile || exit 1 - else - echo "$dbFile not found, skipping $dbTable update" - fi -done - -# cleanup -echo "Restoring db access permissions" -if [ $createDbRootUser = "true" ]; then - # db was just created, enable password access - cat $PG_HBA_CONF.orig | sed 's?host.*all.*all.*127.*?host all all 127.0.0.1/32 md5?g' | sed 's?host.*all.*all.*::1/128.*?host all all ::1/128 md5?g' > $PG_HBA_CONF || exit 1 - rm -f $PG_HBA_CONF.orig -else - # no changes needed to original hba file - mv $PG_HBA_CONF.orig $PG_HBA_CONF -fi - -echo "Restarting database server" -$PG_CONTROL_SCRIPT restart - -echo "Database $DM_DB_NAME created successfully" -echo - - diff --git a/sbin/dm_create_db.sh b/sbin/dm_create_db.sh index a91b8bf6f43fc3ec822060bd2690161765f8169f..52b3b6c0c879c3f5da88d1dd2eca1a6ca4f1d9dd 100755 --- a/sbin/dm_create_db.sh +++ b/sbin/dm_create_db.sh @@ -191,12 +191,17 @@ createDb || exit 1 cd $CURRENT_DIR && cd $DM_DB_SCRIPTS_DIR DM_DB_TABLES="\ experiment_type \ + experiment_station \ + allowed_experiment_station_experiment_type \ + experiment \ + storage \ + endpoint \ + data_folder \ user_info \ - role_type \ + system_role_type \ + experiment_role_type \ user_system_role \ - policy_type \ - policy_property \ - allowed_policy_value + user_experiment_role " for dbTable in $DM_DB_TABLES; do dbFile=populate_$dbTable.sql diff --git a/sbin/dm_deploy_cat_web_service.sh b/sbin/dm_deploy_cat_web_service.sh index e2ea3ce3f9088f4282f69ab1277cdf729fd4f335..2fe77b2ca6066b51772cb44d9a193732215a3db7 100755 --- a/sbin/dm_deploy_cat_web_service.sh +++ b/sbin/dm_deploy_cat_web_service.sh @@ -43,6 +43,10 @@ DM_HOSTNAME=`hostname -f` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} DM_INSTALL_DIR=${DM_INSTALL_DIR:=$DM_ROOT_DIR/..} +if [ -d $DM_INSTALL_DIR ]; then + cd $DM_INSTALL_DIR && DM_INSTALL_DIR=`pwd` || exit 1 +fi + DM_ETC_DIR=${DM_INSTALL_DIR}/etc DM_SSL_DIR=${DM_ETC_DIR}/ssl DM_LOG_DIR=${DM_INSTALL_DIR}/var/log @@ -70,7 +74,7 @@ if [ -z "$DM_DS_WEB_SERVICE_HOST" ]; then DM_DS_WEB_SERVICE_HOST=$DM_HOSTNAME fi -read -p "Enter DM DS Web Service Installation Directory: " DM_DS_INSTALL_DIR +read -p "Enter DM DS Web Service Installation Directory [$DM_INSTALL_DIR]: " DM_DS_INSTALL_DIR if [ -z "$DM_DS_INSTALL_DIR" ]; then DM_DS_INSTALL_DIR=$DM_INSTALL_DIR fi diff --git a/sbin/dm_deploy_daq_web_service.sh b/sbin/dm_deploy_daq_web_service.sh index 4cb9267f1cda9ba8b8b50f1211b925a6e591ed5a..de9da8cdf9b4adee614bd915e00f9c76833e2adb 100755 --- a/sbin/dm_deploy_daq_web_service.sh +++ b/sbin/dm_deploy_daq_web_service.sh @@ -43,6 +43,11 @@ DM_HOSTNAME=`hostname -f` DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm} DM_INSTALL_DIR=${DM_INSTALL_DIR:=$DM_ROOT_DIR/..} +if [ -d $DM_INSTALL_DIR ]; then + cd $DM_INSTALL_DIR && DM_INSTALL_DIR=`pwd` || exit 1 +fi + + DM_ETC_DIR=${DM_INSTALL_DIR}/etc DM_SSL_DIR=${DM_ETC_DIR}/ssl DM_LOG_DIR=${DM_INSTALL_DIR}/var/log @@ -69,7 +74,7 @@ if [ -z "$DM_DS_WEB_SERVICE_HOST" ]; then DM_DS_WEB_SERVICE_HOST=$DM_HOSTNAME fi -read -p "Enter DM DS Web Service Installation Directory: " DM_DS_INSTALL_DIR +read -p "Enter DM DS Web Service Installation Directory [$DM_INSTALL_DIR]: " DM_DS_INSTALL_DIR if [ -z "$DM_DS_INSTALL_DIR" ]; then DM_DS_INSTALL_DIR=$DM_INSTALL_DIR fi diff --git a/sbin/experiment_station.txt b/sbin/experiment_station.txt new file mode 100644 index 0000000000000000000000000000000000000000..3150965691ae2107a5b5eb7e794fd73bd53a4a3e --- /dev/null +++ b/sbin/experiment_station.txt @@ -0,0 +1,121 @@ +"PUP_AFRL_aug16-files", 2 +"PUP_AFRL_dec16-files", 2 +"abraham_jul15-files", 2 +"bei_apr16-files", 2 +"birkedal_jul16-files", 2 +"black_feb16-files", 2 +"broderick_apr16-files", 2 +"broderick_dec16-files", 2 +"brown_apr16-files", 2 +"brown_aug14-files", 2 +"brown_mar16-files", 2 +"brown_oct12-files", 2 +"cchuang_jul16-files", 2 +"cchuang_oct14-files", 2 +"chuang_nov16-files", 2 +"clausen_jul16-files", 2 +"coratella_feb15-files", 2 +"cp-test-001-files", 2 +"depinoy_apr16-files", 2 +"feng_mar16-files", 2 +"gao_mar15-files", 2 +"gonzalez_feb15-files", 2 +"haas_nov16-files", 2 +"hector_mar16-files", 2 +"hector_mar16_rec-files", 2 +"hemker_oct16-files", 2 +"hufnagel_oct16-files", 2 +"id1-test01-files", 2 +"internal_aug16-files", 2 +"kaoumi_nov16-files", 2 +"kenneth_nov16-files", 2 +"knauf_apr16-files", 2 +"kruzic_feb16-files", 2 +"leyunwang_nov15-files", 2 +"lind_jun16-files", 2 +"maass_jun16-files", 2 +"mam_feb16-files", 2 +"mam_kappes_apr16-files", 2 +"meimei_apr16-files", 2 +"meimei_aug14-files", 2 +"meimei_jul16-files", 2 +"meimei_jun12-files", 2 +"meimei_mar13-files", 2 +"miller_apr10-files", 2 +"mo_apr16-files", 2 +"nx_jun15-files", 2 +"okasinski_jul16-files", 2 +"okasinski_jun14-files", 2 +"okasinski_may14-files", 2 +"okasinski_nov14-files", 2 +"okasinski_oct15-files", 2 +"okuniewski_apr16-files", 2 +"okuniewski_mar16-files", 2 +"okuniewski_oct16-files", 2 +"pantleon_aug16-files", 2 +"paranjape_feb16-files", 2 +"park_apr16-files", 2 +"park_aug15-files", 2 +"park_dec13-files", 2 +"park_jul15-files", 2 +"park_jul16-files", 2 +"park_oct16-files", 2 +"petkov_jun16-files", 2 +"s1id-test01-files", 2 +"sangid_jun16-files", 2 +"sangid_oct16-files", 2 +"schaffer_jun13-files", 2 +"seetha_nov16-files", 2 +"singh_apr16-files", 2 +"spear_dec12-files", 2 +"spear_oct16-files", 2 +"spradlin_apr16-files", 2 +"startup_feb16-files", 2 +"startup_mam_jun16-files", 2 +"startup_oct16-files", 2 +"stebner_feb16-files", 2 +"stebner_jun16-files", 2 +"stebner_nov16-files", 2 +"stubbins_jun16-files", 2 +"sun_jul16-files", 2 +"sun_may14-files", 2 +"sun_nov14-files", 2 +"suter_apr14-files", 2 +"suter_dec16-files", 2 +"suter_jul13-files", 2 +"test-ac-files", 2 +"thapa_mar16-files", 2 +"wwang_feb16-files", 2 +"xlwang_jul16-files", 2 +"xu_nov16-files", 2 +"xuan_apr16-files", 2 +"yiren_feb15-files", 2 +"zeng_july15-files", 2 +"zeng_mar16-files", 2 + +"faraone201610-files", 5 +"id8i-test04-files", 5 +"id8i-test05-files", 5 +"leheny201610-files", 5 +"nuzzo201610-files", 5 +"pinar201610-files", 5 + +"Test201611-files", 4 +"Test2016112-files", 4 +"Test2016113-files", 4 +"TwentyFour201611-files", 4 +"id7-2016-7-HONDA-files", 4 +"id7-2016test-files", 4 +"id7-test01-files", 4 +"id7-test02-files", 4 +"id7-test2-files", 4 + +"id33-test01-files", 6 +"id33-test02-files", 6 +"id33-xrim201610-files", 6 +"s33-test01-files", 6 + +"LarsonCuCompress-files", 7 +"YubinDec2016-files", 7 +"id34e-test01-files", 7 + diff --git a/sbin/experiment_station_1id.txt b/sbin/experiment_station_1id.txt new file mode 100644 index 0000000000000000000000000000000000000000..673c85888d828e2d6691c0122b017e55f208e97a --- /dev/null +++ b/sbin/experiment_station_1id.txt @@ -0,0 +1,95 @@ +"PUP_AFRL_aug16-files", 2 +"PUP_AFRL_dec16-files", 2 +"abraham_jul15-files", 2 +"bei_apr16-files", 2 +"birkedal_jul16-files", 2 +"black_feb16-files", 2 +"broderick_apr16-files", 2 +"broderick_dec16-files", 2 +"brown_apr16-files", 2 +"brown_aug14-files", 2 +"brown_mar16-files", 2 +"brown_oct12-files", 2 +"cchuang_jul16-files", 2 +"cchuang_oct14-files", 2 +"chuang_nov16-files", 2 +"clausen_jul16-files", 2 +"coratella_feb15-files", 2 +"cp-test-001-files", 2 +"depinoy_apr16-files", 2 +"feng_mar16-files", 2 +"gao_mar15-files", 2 +"gonzalez_feb15-files", 2 +"haas_nov16-files", 2 +"hector_mar16-files", 2 +"hector_mar16_rec-files", 2 +"hemker_oct16-files", 2 +"hufnagel_oct16-files", 2 +"id1-test01-files", 2 +"internal_aug16-files", 2 +"kaoumi_nov16-files", 2 +"kenneth_nov16-files", 2 +"knauf_apr16-files", 2 +"kruzic_feb16-files", 2 +"leyunwang_nov15-files", 2 +"lind_jun16-files", 2 +"maass_jun16-files", 2 +"mam_feb16-files", 2 +"mam_kappes_apr16-files", 2 +"meimei_apr16-files", 2 +"meimei_aug14-files", 2 +"meimei_jul16-files", 2 +"meimei_jun12-files", 2 +"meimei_mar13-files", 2 +"miller_apr10-files", 2 +"mo_apr16-files", 2 +"nx_jun15-files", 2 +"okasinski_jul16-files", 2 +"okasinski_jun14-files", 2 +"okasinski_may14-files", 2 +"okasinski_nov14-files", 2 +"okasinski_oct15-files", 2 +"okuniewski_apr16-files", 2 +"okuniewski_mar16-files", 2 +"okuniewski_oct16-files", 2 +"pantleon_aug16-files", 2 +"paranjape_feb16-files", 2 +"park_apr16-files", 2 +"park_aug15-files", 2 +"park_dec13-files", 2 +"park_jul15-files", 2 +"park_jul16-files", 2 +"park_oct16-files", 2 +"petkov_jun16-files", 2 +"s1id-test01-files", 2 +"sangid_jun16-files", 2 +"sangid_oct16-files", 2 +"schaffer_jun13-files", 2 +"seetha_nov16-files", 2 +"singh_apr16-files", 2 +"spear_dec12-files", 2 +"spear_oct16-files", 2 +"spradlin_apr16-files", 2 +"startup_feb16-files", 2 +"startup_mam_jun16-files", 2 +"startup_oct16-files", 2 +"stebner_feb16-files", 2 +"stebner_jun16-files", 2 +"stebner_nov16-files", 2 +"stubbins_jun16-files", 2 +"sun_jul16-files", 2 +"sun_may14-files", 2 +"sun_nov14-files", 2 +"suter_apr14-files", 2 +"suter_dec16-files", 2 +"suter_jul13-files", 2 +"test-ac-files", 2 +"thapa_mar16-files", 2 +"wwang_feb16-files", 2 +"xlwang_jul16-files", 2 +"xu_nov16-files", 2 +"xuan_apr16-files", 2 +"yiren_feb15-files", 2 +"zeng_july15-files", 2 +"zeng_mar16-files", 2 + diff --git a/sbin/experiment_station_33id.txt b/sbin/experiment_station_33id.txt new file mode 100644 index 0000000000000000000000000000000000000000..1f82e58eddbf28db1002fdb8d3ef66504f9e0e03 --- /dev/null +++ b/sbin/experiment_station_33id.txt @@ -0,0 +1,5 @@ +"id33-test01-files", 6 +"id33-test02-files", 6 +"id33-xrim201610-files", 6 +"s33-test01-files", 6 + diff --git a/sbin/experiment_station_34ide.txt b/sbin/experiment_station_34ide.txt new file mode 100644 index 0000000000000000000000000000000000000000..c76ec2d3fb6d1ff835d97d466111e15b89874558 --- /dev/null +++ b/sbin/experiment_station_34ide.txt @@ -0,0 +1,4 @@ +"LarsonCuCompress-files", 7 +"YubinDec2016-files", 7 +"id34e-test01-files", 7 + diff --git a/sbin/experiment_station_7id.txt b/sbin/experiment_station_7id.txt new file mode 100644 index 0000000000000000000000000000000000000000..bdfa8b468cf43e75e2eb2aa246507b8074fe43a7 --- /dev/null +++ b/sbin/experiment_station_7id.txt @@ -0,0 +1,10 @@ +"Test201611-files", 4 +"Test2016112-files", 4 +"Test2016113-files", 4 +"TwentyFour201611-files", 4 +"id7-2016-7-HONDA-files", 4 +"id7-2016test-files", 4 +"id7-test01-files", 4 +"id7-test02-files", 4 +"id7-test2-files", 4 + diff --git a/sbin/experiment_station_8idi.txt b/sbin/experiment_station_8idi.txt new file mode 100644 index 0000000000000000000000000000000000000000..fa19d8dd3f36a159090afe4f0e5ab77ea5661036 --- /dev/null +++ b/sbin/experiment_station_8idi.txt @@ -0,0 +1,7 @@ +"faraone201610-files", 5 +"id8i-test04-files", 5 +"id8i-test05-files", 5 +"leheny201610-files", 5 +"nuzzo201610-files", 5 +"pinar201610-files", 5 + diff --git a/sbin/list_dm_releases.sh b/sbin/list_dm_releases.sh deleted file mode 100755 index 9fd16e2b25284c627f8106ece37e6c35333ffc60..0000000000000000000000000000000000000000 --- a/sbin/list_dm_releases.sh +++ /dev/null @@ -1,5 +0,0 @@ -#!/bin/sh - -SVN_ROOT=https://subversion.xray.aps.anl.gov/DataManagement -svn ls $SVN_ROOT/tags - diff --git a/sbin/make_dm_release.sh b/sbin/make_dm_release.sh deleted file mode 100755 index 15663959638a9742ea01c84c5a186ee2595b6e4c..0000000000000000000000000000000000000000 --- a/sbin/make_dm_release.sh +++ /dev/null @@ -1,10 +0,0 @@ -#!/bin/sh - -SVN_ROOT=https://subversion.xray.aps.anl.gov/DataManagement -version=$1 -if [ -z $version ]; then - echo "Usage: $0 <version>" - exit 1 -fi -svn copy $SVN_ROOT/trunk $SVN_ROOT/tags/$version -m "Creating tag $version" - diff --git a/sbin/unconfigure_dm_webapp.sh b/sbin/unconfigure_dm_webapp.sh deleted file mode 100755 index accd877a232c34ce1aec836cbce826049f4216c7..0000000000000000000000000000000000000000 --- a/sbin/unconfigure_dm_webapp.sh +++ /dev/null @@ -1,64 +0,0 @@ -#!/bin/sh - -# -# Script used for un-configuring DM webapp -# Deployment configuration can be set in etc/$DM_DB_NAME.deploy.conf file -# -# Usage: -# -# $0 [DM_DB_NAME] -# - -MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` -if [ -z "${DM_ROOT_DIR}" ]; then - DM_ROOT_DIR=$MY_DIR/.. -fi -DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh -if [ ! -f ${DM_ENV_FILE} ]; then - echo "Environment file ${DM_ENV_FILE} does not exist." - exit 2 -fi -. ${DM_ENV_FILE} > /dev/null - -# Use first argument as db name, if provided -DM_DB_NAME=${DM_DB_NAME:=dm} -if [ ! -z "$1" ]; then - DM_DB_NAME=$1 -fi -echo "Using DB name: $DM_DB_NAME" - -# Look for deployment file in etc directory, and use it to override -# default entries -deployConfigFile=$DM_ROOT_DIR/etc/${DM_DB_NAME}.deploy.conf -if [ -f $deployConfigFile ]; then - echo "Using deployment config file: $deployConfigFile" - . $deployConfigFile -else - echo "Deployment config file $deployConfigFile not found, using defaults" -fi - -DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH - -export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin - -DM_DB_POOL=postgresql_${DM_DB_NAME}_DbPool -DM_DATA_SOURCE=${DM_DB_NAME}_DataSource -DM_DOMAIN=domain1 - -# restart server -echo "Restarting glassfish" -$ASADMIN_CMD stop-domain ${DM_DOMAIN} -$ASADMIN_CMD start-domain ${DM_DOMAIN} - -# delete JDBC resource associated with this connection pool -echo "Deleting JDBC resource $DM_DATA_SOURCE" -$ASADMIN_CMD delete-jdbc-resource ${DM_DATA_SOURCE} - -# delete JDBC connection pool -echo "Deleting JDBC connection pool $DM_DB_POOL" -$ASADMIN_CMD delete-jdbc-connection-pool ${DM_DB_POOL} - - diff --git a/sbin/undeploy_dm_webapp.sh b/sbin/undeploy_dm_webapp.sh deleted file mode 100755 index 4ad3b6d2b2d9e62771beab3adccfa2df62e87525..0000000000000000000000000000000000000000 --- a/sbin/undeploy_dm_webapp.sh +++ /dev/null @@ -1,71 +0,0 @@ -#!/bin/sh - -# -# Script used for undeploying DM webapp -# Deployment configuration can be set in etc/$DM_DB_NAME.deploy.conf file -# -# Usage: -# -# $0 [DM_DB_NAME] -# - -MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` -if [ -z "${DM_ROOT_DIR}" ]; then - DM_ROOT_DIR=$MY_DIR/.. -fi -DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh -if [ ! -f ${DM_ENV_FILE} ]; then - echo "Environment file ${DM_ENV_FILE} does not exist." - exit 2 -fi -. ${DM_ENV_FILE} > /dev/null - -# Use first argument as db name, if provided -DM_DB_NAME=${DM_DB_NAME:=dm} -if [ ! -z "$1" ]; then - DM_DB_NAME=$1 -fi -echo "Using DB name: $DM_DB_NAME" - -# Look for deployment file in etc directory, and use it to override -# default entries -deployConfigFile=$DM_ROOT_DIR/etc/${DM_DB_NAME}.deploy.conf -if [ -f $deployConfigFile ]; then - echo "Using deployment config file: $deployConfigFile" - . $deployConfigFile -else - echo "Deployment config file $deployConfigFile not found, using defaults" -fi - -DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m` -DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=DmWebPortal} -GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH -DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy -DM_APP_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/applications/$DM_CONTEXT_ROOT -DM_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist -DM_WAR_FILE=$DM_CONTEXT_ROOT.war -JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH - -export AS_JAVA=$JAVA_HOME -ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin - -# remove war file from autodeploy directory -echo "Removing war file $DM_DEPLOY_DIR/$DM_WAR_FILE" -rm -f $DM_DEPLOY_DIR/${DM_WAR_FILE}* - -# remove war file from autodeploy directory -if [ -d $DM_APP_DIR ]; then - echo "Removing application directory $DM_APP_DIR" - rm -rf $DM_APP_DIR -else - echo "Application directory $DM_APP_DIR not found" -fi - -# restart server -echo "Restarting glassfish" -$ASADMIN_CMD stop-domain ${DM_DOMAIN} -$ASADMIN_CMD start-domain ${DM_DOMAIN} - - - - diff --git a/sbin/upgrade_experiment.sh b/sbin/upgrade_experiment.sh new file mode 100755 index 0000000000000000000000000000000000000000..b7e2188dc12e6b7178f64f2efcf209b94291e9ba --- /dev/null +++ b/sbin/upgrade_experiment.sh @@ -0,0 +1,31 @@ +#!/bin/sh + +TABLE=experiment + +CURRENT_DIR=`pwd` +MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` +cd $CURRENT_DIR + +POPULATE_SCRIPT=populate_$TABLE.sql +EXPERIMENT_STATION_FILE=$MY_DIR/experiment_station.txt + +cp $POPULATE_SCRIPT $POPULATE_SCRIPT.new +experimentList=`cat $POPULATE_SCRIPT | grep INSERT | awk '{print $13}'` + +# correct insert statements +cmd="cat $POPULATE_SCRIPT.new | sed \"s?name,?name, experiment_station_id, ?g\" > $POPULATE_SCRIPT.new.2 && mv $POPULATE_SCRIPT.new.2 $POPULATE_SCRIPT.new" +eval $cmd || exit 1 + +# insert station id for each experiment +for e in $experimentList; do + eName=`echo $e | sed "s?'??g" | sed "s?,??g"` + echo "Working on experiment $eName" + stationId=`cat $EXPERIMENT_STATION_FILE | grep $eName | head -1 | cut -f2 -d','` + if [ -z "$stationId" ]; then + stationId=1 # test station id + fi + echo "Mapped $eName => $stationId" + cmd="cat $POPULATE_SCRIPT.new | sed \"s?$e?$e $stationId,?g\" > $POPULATE_SCRIPT.new.2 && mv $POPULATE_SCRIPT.new.2 $POPULATE_SCRIPT.new" + eval $cmd || exit 1 +done + diff --git a/sbin/upgrade_user_experiment_role.sh b/sbin/upgrade_user_experiment_role.sh new file mode 100755 index 0000000000000000000000000000000000000000..52f44d5ff7461576eac899a16b68ca89c7e559d3 --- /dev/null +++ b/sbin/upgrade_user_experiment_role.sh @@ -0,0 +1,20 @@ +#!/bin/sh + +TABLE=user_experiment_role + +CURRENT_DIR=`pwd` +MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd` +cd $CURRENT_DIR + +POPULATE_SCRIPT=populate_$TABLE.sql + +cp $POPULATE_SCRIPT $POPULATE_SCRIPT.new + +# eliminate old manager role +cat $POPULATE_SCRIPT.new | grep -v "2)" > $POPULATE_SCRIPT.new.2 && mv $POPULATE_SCRIPT.new.2 $POPULATE_SCRIPT.new || exit 1 + +# fix old PI role +cat $POPULATE_SCRIPT.new | sed 's?3)?1)?g' > $POPULATE_SCRIPT.new.2 && mv $POPULATE_SCRIPT.new.2 $POPULATE_SCRIPT.new || exit 1 + +# fix old user role +cat $POPULATE_SCRIPT.new | sed 's?4)?2)?g' > $POPULATE_SCRIPT.new.2 && mv $POPULATE_SCRIPT.new.2 $POPULATE_SCRIPT.new || exit 1