etc/dm.deploy.conf

+DM_DB_NAME=dm
+DM_DB_USER=dm
+DM_DB_HOST=127.0.0.1
+DM_DB_PORT=11136
+DM_DB_ADMIN_USER=postgres
+DM_DB_ADMIN_HOSTS="127.0.0.1"
+DM_DB_SCRIPTS_DIR=
+DM_SYSTEM_USER=dm
+DM_STORAGE_DIR=
+DM_CONTEXT_ROOT=dm
+DM_WEB_SERVICE_PROTOCOL=https
+DM_DS_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_DS_WEB_SERVICE_PORT=22236
+DM_DAQ_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_DAQ_WEB_SERVICE_PORT=33336
+DM_CAT_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_CAT_WEB_SERVICE_PORT=44436
+DM_SOFTWARE_VERSION="1.0 (DM_DATE)"
+

etc/dm.openssl.conf

+#
+# OpenSSL example configuration file.
+# This is mostly being used for generation of certificate requests.
+#
+
+# This definition stops the following lines choking if HOME isn't
+# defined.
+HOME			= .
+RANDFILE		= $ENV::HOME/.rnd
+
+# Uncomment out to enable OpenSSL configuration see config(3)
+# openssl_conf = openssl_init
+
+# To use this configuration file with the "-extfile" option of the
+# "openssl x509" utility, name here the section containing the
+# X.509v3 extensions to use:
+# extensions		= 
+# (Alternatively, use a configuration file that has only
+# X.509v3 extensions in its main [= default] section.)
+
+[openssl_init]
+# Extra OBJECT IDENTIFIER info:
+oid_section = new_oids
+alg_section = algs
+
+[ new_oids ]
+
+# We can add new OIDs in here for use by any config aware application
+# Add a simple OID like this:
+# shortname=Long Object Identifier Name, 1.2.3.4
+# Or use config file substitution like this:
+# testoid2=OID2 LONG NAME, ${testoid1}.5.6, OTHER OID
+
+[ algs ]
+# Algorithm configuration options. Currently just fips_mode
+fips_mode = no
+
+####################################################################
+[ ca ]
+default_ca	= CA_default		# The default ca section
+
+####################################################################
+[ CA_default ]
+
+dir		= $ENV::DM_INSTALL_DIR/etc/CA		# Where everything is kept
+certs		= $dir/certs		# Where the issued certs are kept
+crl_dir		= $dir/crl		# Where the issued crl are kept
+database	= $dir/index.txt	# database index file.
+#unique_subject	= no			# Set to 'no' to allow creation of
+					# several ctificates with same subject.
+new_certs_dir	= $dir/newcerts		# default place for new certs.
+
+certificate	= $dir/cacert.pem 	# The CA certificate
+serial		= $dir/serial 		# The current serial number
+crlnumber	= $dir/crlnumber	# the current crl number
+					# must be commented out to leave a V1 CRL
+crl		= $dir/crl.pem 		# The current CRL
+private_key	= $dir/private/cakey.pem# The private key
+RANDFILE	= $dir/private/.rand	# private random number file
+
+x509_extensions	= usr_cert		# The extentions to add to the cert
+
+# Comment out the following two lines for the "traditional"
+# (and highly broken) format.
+name_opt 	= ca_default		# Subject Name options
+cert_opt 	= ca_default		# Certificate field options
+
+# Extension copying option: use with caution.
+# copy_extensions = copy
+
+# Extensions to add to a CRL. Note: Netscape communicator chokes on V2 CRLs
+# so this is commented out by default to leave a V1 CRL.
+# crlnumber must also be commented out to leave a V1 CRL.
+# crl_extensions	= crl_ext
+
+default_days	= 3650			# how long to certify for
+default_crl_days= 30			# how long before next CRL
+default_md	= sha512		# which md to use.
+preserve	= no			# keep passed DN ordering
+
+# A few difference way of specifying how similar the request should look
+# For type CA, the listed attributes must be the same, and the optional
+# and supplied fields are just that :-)
+policy		= policy_match
+
+# For the CA policy
+[ policy_match ]
+countryName		= match
+stateOrProvinceName	= optional
+organizationName	= match
+organizationalUnitName	= optional
+commonName		= supplied
+emailAddress		= optional
+
+# For the 'anything' policy
+# At this point in time, you must list all acceptable 'object'
+# types.
+[ policy_anything ]
+countryName		= optional
+#stateOrProvinceName	= optional
+#localityName		= optional
+organizationName	= optional
+#organizationalUnitName	= optional
+commonName		= supplied
+emailAddress		= optional
+
+####################################################################
+[ req ]
+default_bits		= 2048
+default_md		= sha512
+default_keyfile 	= privkey.pem
+distinguished_name	= req_distinguished_name
+attributes		= req_attributes
+x509_extensions	= v3_ca	# The extentions to add to the self signed cert
+
+# Passwords for private keys if not present they will be prompted for
+# input_password = secret
+# output_password = secret
+
+# This sets a mask for permitted string types. There are several options. 
+# default: PrintableString, T61String, BMPString.
+# pkix	 : PrintableString, BMPString.
+# utf8only: only UTF8Strings.
+# nombstr : PrintableString, T61String (no BMPStrings or UTF8Strings).
+# MASK:XXXX a literal mask value.
+# WARNING: current versions of Netscape crash on BMPStrings or UTF8Strings
+# so use this option with caution!
+# we use PrintableString+UTF8String mask so if pure ASCII texts are used
+# the resulting certificates are compatible with Netscape
+string_mask = MASK:0x2002
+
+# req_extensions = v3_req # The extensions to add to a certificate request
+
+[ req_distinguished_name ]
+countryName			= Country Name (2 letter code)
+countryName_default		= US
+countryName_min			= 2
+countryName_max			= 2
+
+#stateOrProvinceName		= State or Province Name (full name)
+#stateOrProvinceName_default	= 
+
+#localityName			= Locality Name (eg, city)
+#localityName_default		= 
+
+0.organizationName		= Organization Name (eg, company)
+0.organizationName_default	= Argonne National Laboratory
+
+# we can do this but it is not needed normally :-)
+1.organizationName		= Second Organization Name (eg, company)
+1.organizationName_default	= Advanced Photon Source
+
+organizationalUnitName		= Organizational Unit Name (eg, section)
+organizationalUnitName_default	= AES/SSG
+
+commonName          = Common Name (eg, your name or your server\'s hostname)
+commonName_max          = 64
+
+emailAddress            = Email Address
+emailAddress_max		= 64
+
+# SET-ex3			= SET extension number 3
+
+[ req_attributes ]
+challengePassword		= A challenge password
+challengePassword_min		= 4
+challengePassword_max		= 20
+
+unstructuredName		= An optional company name
+
+[ usr_cert ]
+
+# These extensions are added when 'ca' signs a request.
+
+# This goes against PKIX guidelines but some CAs do it and some software
+# requires this to avoid interpreting an end user certificate as a CA.
+
+basicConstraints=CA:FALSE
+
+# Here are some examples of the usage of nsCertType. If it is omitted
+# the certificate can be used for anything *except* object signing.
+
+# This is OK for an SSL server.
+# nsCertType			= server
+
+# For an object signing certificate this would be used.
+# nsCertType = objsign
+
+# For normal client use this is typical
+# nsCertType = client, email
+
+# and for everything including object signing:
+# nsCertType = client, email, objsign
+
+# This is typical in keyUsage for a client certificate.
+# keyUsage = nonRepudiation, digitalSignature, keyEncipherment
+
+# This will be displayed in Netscape's comment listbox.
+nsComment			= "OpenSSL Generated Certificate"
+
+# PKIX recommendations harmless if included in all certificates.
+subjectKeyIdentifier=hash
+authorityKeyIdentifier=keyid,issuer
+
+# This stuff is for subjectAltName and issuerAltname.
+# Import the email address.
+# subjectAltName=email:copy
+# An alternative to produce certificates that aren't
+# deprecated according to PKIX.
+# subjectAltName=email:move
+
+# Copy subject details
+# issuerAltName=issuer:copy
+
+#nsCaRevocationUrl		= http://www.domain.dom/ca-crl.pem
+#nsBaseUrl
+#nsRevocationUrl
+#nsRenewalUrl
+#nsCaPolicyUrl
+#nsSslServerName
+
+[ server ]
+
+basicConstraints=CA:FALSE
+nsCertType                      = server
+nsComment                       = "OpenSSL Generated Server Certificate"
+subjectKeyIdentifier=hash
+authorityKeyIdentifier=keyid,issuer:always
+
+
+[ v3_req ]
+
+# Extensions to add to a certificate request
+
+basicConstraints = CA:FALSE
+keyUsage = nonRepudiation, digitalSignature, keyEncipherment
+
+[ v3_ca ]
+
+
+# Extensions for a typical CA
+
+
+# PKIX recommendation.
+
+subjectKeyIdentifier=hash
+
+authorityKeyIdentifier=keyid:always,issuer:always
+
+# This is what PKIX recommends but some broken software chokes on critical
+# extensions.
+basicConstraints = critical,CA:true
+# So we do this instead.
+#basicConstraints = CA:true
+
+# Key usage: this is typical for a CA certificate. However since it will
+# prevent it being used as an test self-signed certificate it is best
+# left out by default.
+# keyUsage = cRLSign, keyCertSign
+
+# Some might want this also
+# nsCertType = sslCA, emailCA
+
+# Include email address in subject alt name: another PKIX recommendation
+# subjectAltName=email:copy
+# Copy issuer details
+# issuerAltName=issuer:copy
+
+# DER hex encoding of an extension: beware experts only!
+# obj=DER:02:03
+# Where 'obj' is a standard or added object
+# You can even override a supported extension:
+# basicConstraints= critical, DER:30:03:01:01:FF
+
+[ crl_ext ]
+
+# CRL extensions.
+# Only issuerAltName and authorityKeyIdentifier make any sense in a CRL.
+
+# issuerAltName=issuer:copy
+authorityKeyIdentifier=keyid:always,issuer:always
+
+[ proxy_cert_ext ]
+# These extensions should be added when creating a proxy certificate
+
+# This goes against PKIX guidelines but some CAs do it and some software
+# requires this to avoid interpreting an end user certificate as a CA.
+
+basicConstraints=CA:FALSE
+
+# Here are some examples of the usage of nsCertType. If it is omitted
+# the certificate can be used for anything *except* object signing.
+
+# This is OK for an SSL server.
+# nsCertType			= server
+
+# For an object signing certificate this would be used.
+# nsCertType = objsign
+
+# For normal client use this is typical
+# nsCertType = client, email
+
+# and for everything including object signing:
+# nsCertType = client, email, objsign
+
+# This is typical in keyUsage for a client certificate.
+# keyUsage = nonRepudiation, digitalSignature, keyEncipherment
+
+# This will be displayed in Netscape's comment listbox.
+nsComment			= "OpenSSL Generated Certificate"
+
+# PKIX recommendations harmless if included in all certificates.
+subjectKeyIdentifier=hash
+authorityKeyIdentifier=keyid,issuer:always
+
+# This stuff is for subjectAltName and issuerAltname.
+# Import the email address.
+# subjectAltName=email:copy
+# An alternative to produce certificates that aren't
+# deprecated according to PKIX.
+# subjectAltName=email:move
+
+# Copy subject details
+# issuerAltName=issuer:copy
+
+#nsCaRevocationUrl		= http://www.domain.dom/ca-crl.pem
+#nsBaseUrl
+#nsRevocationUrl
+#nsRenewalUrl
+#nsCaPolicyUrl
+#nsSslServerName
+
+# This really needs to be in place for it to be a proxy certificate.
+proxyCertInfo=critical,language:id-ppl-anyLanguage,pathlen:3,policy:foo

etc/dm.sudo-rules.template

+## DM user sudo functions
+## All strings starting with DM_* have to be replaced with actual values 
+Host_Alias HOST=DM_HOSTNAME
+User_Alias USER=DM_SYSTEM_UNIX_ACCOUNT
+Cmnd_Alias SETFACL=/usr/bin/setfacl -m group\:*\:rx DM_STORAGE_DIR/*
+Cmnd_Alias USERMOD=/usr/sbin/usermod -a -G * *
+Cmnd_Alias GROUPADD=/usr/sbin/groupadd *
+Cmnd_Alias CHOWN=/bin/chown \:* *
+Cmnd_Alias CHOWN_R=/bin/chown -R \:* *
+Cmnd_Alias GPASSWD=/usr/bin/gpasswd * * *
+Cmnd_Alias NSCD=/usr/sbin/nscd -i *
+
+USER HOST = (root) NOPASSWD: SETFACL,USERMOD,GROUPADD,CHOWN,CHOWN_R,GPASSWD,NSCD
+
+

etc/dm_dev.deploy.conf

+DM_DB_NAME=dm_dev
+DM_DB_USER=dm_dev
+DM_DB_HOST=127.0.0.1
+DM_DB_PORT=11136
+DM_DB_ADMIN_USER=postgres
+DM_DB_ADMIN_HOSTS="127.0.0.1"
+DM_DB_SCRIPTS_DIR=
+DM_SYSTEM_USER=dm
+DM_STORAGE_DIR=
+DM_CONTEXT_ROOT=dm_dev
+DM_WEB_SERVICE_PROTOCOL=https
+DM_DS_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_DS_WEB_SERVICE_PORT=22237
+DM_DAQ_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_DAQ_WEB_SERVICE_PORT=33337
+DM_CAT_WEB_SERVICE_HOST=DM_HOSTNAME
+DM_CAT_WEB_SERVICE_PORT=44437
+DM_SOFTWARE_VERSION="Development Snapshot (DM_DATE)"
+
+

etc/ds-web-service.conf.template

+[WebService]
+serviceHost=0.0.0.0
+servicePort=22236
+sslCertFile=DM_INSTALL_DIR/etc/ssl/ds-web-service.crt
+sslKeyFile=DM_INSTALL_DIR/etc/ssl/ds-web-service.key
+sslCaCertFile=DM_INSTALL_DIR/etc/ssl/cacert.pem
+
+[AuthorizationPrincipalManager]
+principalRetriever=DbPrincipalRetriever()
+#principalRetriever=NoOpPrincipalRetriever()
+principalAuthenticator1=CryptedPasswordPrincipalAuthenticator()
+principalAuthenticator2=LdapPasswordPrincipalAuthenticator(serverUrl='ldaps://dmid-vm.xray.aps.anl.gov:636', dnFormat='uid=%s,ou=people,o=aps.anl.gov,dc=aps,dc=anl,dc=gov')
+
+[ExperimentManager]
+storageDirectory=DM_STORAGE_DIR
+storageId=extrepid
+manageStoragePermissions=True
+#platformUtility=dm.common.utility.linuxUtility.LinuxUtility()
+platformUtility=dm.common.utility.ldapLinuxPlatformUtility.LdapLinuxPlatformUtility('ldaps://dmid-vm.xray.aps.anl.gov:636', 'uid=DM_SYSTEM_UNIX_ACCOUNT,ou=People,o=aps.anl.gov,dc=aps,dc=anl,dc=gov', 'DM_INSTALL_DIR/etc/DM_SYSTEM_UNIX_ACCOUNT.ldap.passwd', groupDnFormat='cn=%s,ou=DM,ou=Group,o=aps.anl.gov,dc=aps,dc=anl,dc=gov', minGidNumber=66000)
+
+[LdapLinuxPlatformUtility]
+refreshAuthFilesCommand=
+
+[DbManager]
+dbSchema=DM_DB_NAME
+dbUser=DM_DB_NAME
+dbPasswordFile=DM_INSTALL_DIR/etc/DM_DB_NAME.db.passwd
+
+[MongoDbManager]
+mongoDbName=dm
+mongoDbUri=mongodb://localhost:27017
+mongoDbUser=dm
+mongoDbPasswordFile=DM_INSTALL_DIR/etc/DM_DB_NAME.db.passwd
+
+[FileProcessingManager]
+numberOfProcessingThreads=3
+defaultNumberOfRetries=3
+defaultRetryWaitPeriodInSeconds=60
+#fileProcessor1=dm.common.processing.plugins.mongoDbFileCatalogPlugin.MongoDbFileCatalogPlugin()
+#fileProcessor2=dm.common.processing.plugins.sddsParameterProcessingPlugin.SddsParameterProcessingPlugin()
+#fileProcessor3=dm.common.processing.plugins.scriptProcessingPlugin.ScriptProcessingPlugin()
+#fileProcessor4=dm.common.processing.plugins.sgeJobSubmissionPlugin.SgeJobSubmissionPlugin('/opt/sge')
+
+# Available logger levels: debug, info, warn, error, critical
+[ConsoleLogging]
+handler=ConsoleLoggingHandler(sys.stdout,)
+level=debug
+format=%(asctime)s,%(msecs)003d %(levelname)s %(filename)s:%(lineno)d %(process)d:  %(message)s
+dateFormat=%Y/%m/%d %H:%M:%S
+
+[FileLogging]
+handler=TimedRotatingFileLoggingHandler('DM_INSTALL_DIR/var/log/ds-web-service.log')
+level=debug
+format=%(asctime)s,%(msecs)003d %(levelname)s %(filename)s:%(lineno)d %(process)d:  %(message)s
+dateFormat=%Y/%m/%d %H:%M:%S
+

etc/init.d/dm-cat-web-service

+#!/bin/bash
+
+#
+# dm-cat-web-service
+#
+# Starts the DM WebService daemon
+#
+# chkconfig: 345 98 98
+# description: controls DM Web Service daemon
+
+### BEGIN INIT INFO
+# Provides: dm-cat-web-service
+# Required-Start: $local_fs $network
+# Required-Stop: $local_fs $network
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: Controls DM CAT Web Service daemon
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Arguments
+ACTION=$1
+DM_DB_NAME=$2
+DM_DB_NAME=${DM_DB_NAME:=dm}
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+mkdir -p ${DM_INSTALL_DIR}/var/run
+mkdir -p ${DM_INSTALL_DIR}/var/log
+
+DM_DAEMON_NAME="${DM_DB_NAME}.CatWebService"
+DM_DAEMON_CMD=${DM_ROOT_DIR}/sbin/catWebService.py
+DM_PID_FILE=${DM_INSTALL_DIR}/var/run/${DM_DB_NAME}.cat-web-service.pid
+DM_CONFIG_FILE=${DM_INSTALL_DIR}/etc/${DM_DB_NAME}.cat-web-service.conf
+DM_DAEMON_START_ARGS="-d -p $DM_PID_FILE --config-file $DM_CONFIG_FILE"
+
+# Determine su command
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+RETVAL=0
+start() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -eq 0 ]; then
+        PID=`cat $DM_PID_FILE`
+        echo $"$DM_DAEMON_NAME daemon is already running (pid: $PID)."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Starting $DM_DAEMON_NAME daemon: "	
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        $SU -m -c "${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+	RETVAL=$?
+	[ $RETVAL -eq 0 ] &&  success $"$DM_DAEMON_NAME startup" || failure $"$DM_DAEMON_NAME startup"
+    echo
+    return $RETVAL
+}
+
+stop() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -ne 0 ]; then
+        echo $"$DM_DAEMON_NAME daemon is not running."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Stopping $DM_DAEMON_NAME daemon: "
+    PID=`cat $DM_PID_FILE`
+    kill $PID
+	RETVAL=$?
+    sleep 1
+    # Make sure we kill the process always, regardless of 
+    # what happened with first kill
+    kill -KILL $PID > /dev/null 2>&1
+	[ $RETVAL -eq 0 ] && rm -f $DM_PID_FILE && success $"$DM_DAEMON_NAME shutdown" || failure $"$DM_DAEMON_NAME shutdown"
+	echo
+    return $RETVAL
+}
+
+restart() {
+    stop
+    sleep 1
+    start
+}
+
+case "$ACTION" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        restart
+    ;;
+    status)
+        status -p $DM_PID_FILE "$DM_DAEMON_NAME" 2> /dev/null
+        RETVAL=$?
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        RETVAL=2
+esac
+
+exit $RETVAL

etc/init.d/dm-daq-services

+#!/bin/sh
+
+# Helper script to start and stop DAQ node services
+
+MY_DIR=`dirname $0` && cd $MYDIR && MYDIR=`pwd`
+
+# The list below defines order of starting/stopping services
+startList="mongodb mongo-express daq-web-service cat-web-service"
+stopList="cat-web-service daq-web-service mongo-express mongodb"
+restartList=$startList
+statusList=$startList
+
+# Check action
+action=$1
+case $action in
+    start|stop|restart|status)
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        exit 1
+esac
+
+# Perform action
+serviceList="\$"${action}List
+serviceList=`eval "echo $serviceList"`
+for service in $serviceList; do
+    $MY_DIR/dm-$service $action 
+    sleep 1
+done
+

etc/init.d/dm-daq-web-service

+#!/bin/bash
+
+#
+# dm-daq-web-service
+#
+# Starts the DM WebService daemon
+#
+# chkconfig: 345 98 98
+# description: controls DM Web Service daemon
+
+### BEGIN INIT INFO
+# Provides: dm-daq-web-service
+# Required-Start: $local_fs $network
+# Required-Stop: $local_fs $network
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: Controls DM DAQ Web Service daemon
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Arguments
+ACTION=$1
+DM_DB_NAME=$2
+DM_DB_NAME=${DM_DB_NAME:=dm}
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+mkdir -p ${DM_INSTALL_DIR}/var/run
+mkdir -p ${DM_INSTALL_DIR}/var/log
+
+DM_DAEMON_NAME="${DM_DB_NAME}.DaqWebService"
+DM_DAEMON_CMD=${DM_ROOT_DIR}/sbin/daqWebService.py
+DM_PID_FILE=${DM_INSTALL_DIR}/var/run/${DM_DB_NAME}.daq-web-service.pid
+DM_CONFIG_FILE=${DM_INSTALL_DIR}/etc/${DM_DB_NAME}.daq-web-service.conf
+DM_DAEMON_START_ARGS="-d -p $DM_PID_FILE --config-file $DM_CONFIG_FILE"
+
+# Determine su command
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+RETVAL=0
+start() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -eq 0 ]; then
+        PID=`cat $DM_PID_FILE`
+        echo $"$DM_DAEMON_NAME daemon is already running (pid: $PID)."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Starting $DM_DAEMON_NAME daemon: "	
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        $SU -m -c "${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+	RETVAL=$?
+	[ $RETVAL -eq 0 ] &&  success $"$DM_DAEMON_NAME startup" || failure $"$DM_DAEMON_NAME startup"
+    echo
+    return $RETVAL
+}
+
+stop() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -ne 0 ]; then
+        echo $"$DM_DAEMON_NAME daemon is not running."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Stopping $DM_DAEMON_NAME daemon: "
+    PID=`cat $DM_PID_FILE`
+    kill $PID
+	RETVAL=$?
+    sleep 1
+    # Make sure we kill the process always, regardless of 
+    # what happened with first kill
+    kill -KILL $PID > /dev/null 2>&1
+	[ $RETVAL -eq 0 ] && rm -f $DM_PID_FILE && success $"$DM_DAEMON_NAME shutdown" || failure $"$DM_DAEMON_NAME shutdown"
+	echo
+    return $RETVAL
+}
+
+restart() {
+    stop
+    sleep 1
+    start
+}
+
+case "$ACTION" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        restart
+    ;;
+    status)
+        status -p $DM_PID_FILE "$DM_DAEMON_NAME" 2> /dev/null
+        RETVAL=$?
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        RETVAL=2
+esac
+
+exit $RETVAL

etc/init.d/dm-ds-services

+#!/bin/sh
+
+# Helper script to start and stop DAQ node services
+
+MY_DIR=`dirname $0` && cd $MYDIR && MYDIR=`pwd`
+
+# The list below defines order of starting/stopping services
+startList="postgresql glassfish ds-web-service"
+stopList="ds-web-service glassfish postgresql"
+restartList=$startList
+statusList=$startList
+
+# Check action
+action=$1
+case $action in
+    start|stop|restart|status)
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        exit 1
+esac
+
+# Perform action
+serviceList="\$"${action}List
+serviceList=`eval "echo $serviceList"`
+for service in $serviceList; do
+    $MY_DIR/dm-$service $action 
+    sleep 1
+done
+

etc/init.d/dm-ds-web-service

+#!/bin/bash
+
+#
+# dm-ds-web-service
+#
+# Starts the DM WebService daemon
+#
+# chkconfig: 345 98 98
+# description: controls DM Web Service daemon
+
+### BEGIN INIT INFO
+# Provides: dm-ds-web-service
+# Required-Start: $local_fs $network
+# Required-Stop: $local_fs $network
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: Controls DM DS Web Service daemon
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Arguments
+ACTION=$1
+DM_DB_NAME=$2
+DM_DB_NAME=${DM_DB_NAME:=dm}
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+mkdir -p ${DM_INSTALL_DIR}/var/run
+mkdir -p ${DM_INSTALL_DIR}/var/log
+
+DM_DAEMON_NAME="${DM_DB_NAME}.DsWebService"
+DM_DAEMON_CMD=${DM_ROOT_DIR}/sbin/dsWebService.py
+DM_PID_FILE=${DM_INSTALL_DIR}/var/run/${DM_DB_NAME}.ds-web-service.pid
+DM_CONFIG_FILE=${DM_INSTALL_DIR}/etc/${DM_DB_NAME}.ds-web-service.conf
+DM_DAEMON_START_ARGS="-d -p $DM_PID_FILE --config-file $DM_CONFIG_FILE"
+
+# Determine su command
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+RETVAL=0
+start() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -eq 0 ]; then
+        PID=`cat $DM_PID_FILE`
+        echo $"$DM_DAEMON_NAME daemon is already running (pid: $PID)."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Starting $DM_DAEMON_NAME daemon: "	
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        $SU -m -c "${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+	RETVAL=$?
+	[ $RETVAL -eq 0 ] &&  success $"$DM_DAEMON_NAME startup" || failure $"$DM_DAEMON_NAME startup"
+    echo
+    return $RETVAL
+}
+
+stop() {
+    # Check if service is already running
+    status -p $DM_PID_FILE > /dev/null 2>&1
+    if [ $? -ne 0 ]; then
+        echo $"$DM_DAEMON_NAME daemon is not running."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Stopping $DM_DAEMON_NAME daemon: "
+    PID=`cat $DM_PID_FILE`
+    kill $PID
+	RETVAL=$?
+    sleep 1
+    # Make sure we kill the process always, regardless of 
+    # what happened with first kill
+    kill -KILL $PID > /dev/null 2>&1
+	[ $RETVAL -eq 0 ] && rm -f $DM_PID_FILE && success $"$DM_DAEMON_NAME shutdown" || failure $"$DM_DAEMON_NAME shutdown"
+	echo
+    return $RETVAL
+}
+
+restart() {
+    stop
+    sleep 1
+    start
+}
+
+case "$ACTION" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        restart
+    ;;
+    status)
+        status -p $DM_PID_FILE "$DM_DAEMON_NAME" 2> /dev/null
+        RETVAL=$?
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        RETVAL=2
+esac
+
+exit $RETVAL

etc/init.d/dm-glassfish

+#! /bin/sh
+### BEGIN INIT INFO
+# Provides:          glassfish
+# Required-Start:    $remote_fs $network $syslog
+# Required-Stop:     $remote_fs $network $syslog
+# Default-Start:     2 3 4 5
+# Default-Stop:      0 1 6
+# Short-Description: Starts GlassFish
+# Description:       Starts GlassFish application server
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Source networking configuration.
+. /etc/sysconfig/network
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+        
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+export AS_JAVA=$DM_OPT_DIR/java/$DM_HOST_ARCH
+DM_GLASSFISH_DIR=$DM_OPT_DIR/glassfish
+DERBY_DIR=$DM_OPT_DIR/glassfish/javadb/bin
+
+DM_DAEMON_NAME=glassfish
+DM_DAEMON_CONTROL_CMD=$DM_GLASSFISH_DIR/bin/asadmin
+DM_DAEMON_START_ARGS="start-domain domain1"
+DM_DAEMON_STOP_ARGS="stop-domain domain1"
+DM_DAEMON_STATUS_CMDS="uptime list-domains list-applications list-jdbc-resources"
+
+start() {
+    echo -n $"Starting ${DM_DAEMON_NAME}: "       
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        su -m -c "${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+    RETVAL=$?
+    [ $RETVAL -eq 0 ] && success $"${DM_DAEMON_NAME} startup" || failure $"${DM_DAEMON_NAME} startup"
+    echo
+}
+
+stop() {
+    echo -n $"Stopping ${DM_DAEMON_NAME}: "       
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        su -m -c "${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_STOP_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CONTROL_CMD} ${DM_DAEMON_STOP_ARGS}
+    fi
+    RETVAL=$?
+    [ $RETVAL -eq 0 ] && success $"${DM_DAEMON_NAME} shutdown" || failure $"${DM_DAEMON_NAME} shutdown"
+    echo
+}
+
+status() {
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        for cmd in ${DM_DAEMON_STATUS_CMDS}; do
+            su -m -c "${DM_DAEMON_CONTROL_CMD} ${cmd}" ${DM_USER}
+        done
+    else
+        for cmd in ${DM_DAEMON_STATUS_CMDS}; do
+            ${DM_DAEMON_CONTROL_CMD} ${cmd}
+        done
+    fi
+}
+
+case "$1" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        stop
+        start
+    ;;
+    status)
+        status
+    ;;
+    *)
+        echo "Usage: $0 {start|stop|restart|status}"
+        exit 1
+    ;;
+esac
+
+

etc/init.d/dm-mongo-express

+#!/bin/bash
+
+#
+# dm-mongo-express
+#
+# Starts the DM Mongo Express daemon
+#
+# chkconfig: 345 98 98
+# description: controls DM Mongo Express daemon
+
+### BEGIN INIT INFO
+# Provides: dm-mongo-express
+# Required-Start: $local_fs $network
+# Required-Stop: $local_fs $network
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: Controls DM Mongo Express daemon
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Arguments
+ACTION=$1
+DM_DB_NAME=$2
+DM_DB_NAME=${DM_DB_NAME:=dm}
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+mkdir -p ${DM_INSTALL_DIR}/var/run
+mkdir -p ${DM_INSTALL_DIR}/var/log
+
+DM_MONGODB_HOST=${DM_MONGODB_HOST:=127.0.0.1}
+DM_MONGODB_PORT=${DM_MONGODB_PORT:=27017}
+DM_NODE_DIR=${DM_OPT_DIR}/node
+DM_FOREVER_DIR=${DM_NODE_DIR}/bin/node_modules/forever
+DM_MONGO_EXPRESS_DIR=${DM_NODE_DIR}/bin/node_modules/mongo-express
+
+DM_DAEMON_NAME="${DM_DB_NAME}.MongoExpress"
+DM_DAEMON_CMD=${DM_FOREVER_DIR}/bin/forever
+DM_DAEMON_WORK_DIR=${DM_INSTALL_DIR}/var/run/mongo-express
+DM_DAEMON_PID_FILE=${DM_INSTALL_DIR}/var/run/mongo-express.pid
+DM_DAEMON_LOG_FILE=${DM_INSTALL_DIR}/var/log/mongo-express.log
+DM_DAEMON_OUT_FILE=${DM_INSTALL_DIR}/var/log/mongo-express.put
+DM_DAEMON_ERR_FILE=${DM_INSTALL_DIR}/var/log/mongo-express.err
+DM_DAEMON_START_ARGS="start \
+    --sourceDIR $DM_MONGO_EXPRESS_DIR \
+    --workingDir $DM_DAEMON_WORK_DIR \
+    -p $MONGO_EXPRESS_FOREVER_PATH \
+    --pidFile $DM_DAEMON_PID_FILE \
+    -l $DM_DAEMON_LOG_FILE \
+    -o $DM_DAEMON_OUT_FILE \
+    -e $DM_DAEMON_ERR_FILE \
+    --append \
+    --killSignal=SIGTERM \
+    $DM_MONGO_EXPRESS_DIR/app.js"
+
+mkdir -p $DM_DAEMON_WORK_DIR
+
+# Determine su command
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+RETVAL=0
+start() {
+    # Check if service is already running
+    status -p $DM_DAEMON_PID_FILE > /dev/null 2>&1
+    if [ $? -eq 0 ]; then
+        PID=`cat $DM_DAEMON_PID_FILE`
+        echo $"$DM_DAEMON_NAME daemon is already running (pid: $PID)."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Starting $DM_DAEMON_NAME daemon: "	
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        $SU -m -c "${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+	RETVAL=$?
+	[ $RETVAL -eq 0 ] &&  success $"$DM_DAEMON_NAME startup" || failure $"$DM_DAEMON_NAME startup"
+    echo
+    return $RETVAL
+}
+
+stop() {
+    # Check if service is already running
+    status -p $DM_DAEMON_PID_FILE > /dev/null 2>&1
+    if [ $? -ne 0 ]; then
+        echo $"$DM_DAEMON_NAME daemon is not running."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Stopping $DM_DAEMON_NAME daemon: "
+    PID=`cat $DM_DAEMON_PID_FILE`
+    $DM_DAEMON_CMD stop $PID
+    RETVAL=$?
+    [ $RETVAL -eq 0 ] && rm -f $DM_DAEMON_PID_FILE && success $"$DM_DAEMON_NAME shutdown" || failure $"$DM_DAEMON_NAME shutdown"
+    echo
+    return $RETVAL
+}
+
+restart() {
+    stop
+    sleep 1
+    start
+}
+
+case "$ACTION" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        restart
+    ;;
+    status)
+        status -p $DM_DAEMON_PID_FILE "$DM_DAEMON_NAME" 2> /dev/null
+        RETVAL=$?
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        RETVAL=2
+esac
+
+exit $RETVAL

etc/init.d/dm-mongodb

+#!/bin/bash
+
+#
+# dm-mongodb
+#
+# Starts the DM Mongo DB daemon
+#
+# chkconfig: 345 98 98
+# description: controls DM Mongo DB daemon
+
+### BEGIN INIT INFO
+# Provides: dm-mongodb
+# Required-Start: $local_fs $network
+# Required-Stop: $local_fs $network
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: Controls DM Mongo DB daemon
+### END INIT INFO
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Arguments
+ACTION=$1
+DM_DB_NAME=$2
+DM_DB_NAME=${DM_DB_NAME:=dm}
+
+# Set root to default if needed.
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/../..
+fi
+
+# Source environment file.
+DM_USER=`id -nu`
+DM_HOST=`hostname -s`
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+mkdir -p ${DM_INSTALL_DIR}/var/run
+mkdir -p ${DM_INSTALL_DIR}/var/log
+
+DM_MONGODB_HOST=${DM_MONGODB_HOST:=127.0.0.1}
+DM_MONGODB_PORT=${DM_MONGODB_PORT:=27017}
+DM_MONGODB_DIR=${DM_OPT_DIR}/mongodb/${DM_HOST_ARCH}
+DM_MONGODB_DATA_DIR=${DM_MONGODB_DIR}/data
+mkdir -p ${DM_MONGODB_DATA_DIR}
+
+DM_DAEMON_NAME="${DM_DB_NAME}.MongoDB"
+DM_DAEMON_CMD=${DM_MONGODB_DIR}/bin/mongod
+DM_DAEMON_PID_FILE=${DM_INSTALL_DIR}/var/run/mongodb.pid
+DM_DAEMON_LOG_FILE=${DM_INSTALL_DIR}/var/log/mongodb.log
+DM_DAEMON_START_ARGS="--fork --pidfilepath $DM_DAEMON_PID_FILE --logpath $DM_DAEMON_LOG_FILE --bind_ip $DM_MONGODB_HOST --port $DM_MONGODB_PORT --dbpath $DM_MONGODB_DATA_DIR"
+
+# Determine su command
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+RETVAL=0
+start() {
+    # Check if service is already running
+    status -p $DM_DAEMON_PID_FILE > /dev/null 2>&1
+    if [ $? -eq 0 ]; then
+        PID=`cat $DM_DAEMON_PID_FILE`
+        echo $"$DM_DAEMON_NAME daemon is already running (pid: $PID)."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Starting $DM_DAEMON_NAME daemon: "	
+    # Check if we're a privileged user
+    if [ `id -u` = 0 -a ${DM_USER} != "root" ]; then
+        $SU -m -c "${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}" ${DM_USER}
+    else
+        ${DM_DAEMON_CMD} ${DM_DAEMON_START_ARGS}
+    fi
+	RETVAL=$?
+	[ $RETVAL -eq 0 ] &&  success $"$DM_DAEMON_NAME startup" || failure $"$DM_DAEMON_NAME startup"
+    echo
+    return $RETVAL
+}
+
+stop() {
+    # Check if service is already running
+    status -p $DM_DAEMON_PID_FILE > /dev/null 2>&1
+    if [ $? -ne 0 ]; then
+        echo $"$DM_DAEMON_NAME daemon is not running."	
+        RETVAL=1
+        return $RETVAL
+    fi
+    echo -n $"Stopping $DM_DAEMON_NAME daemon: "
+    PID=`cat $DM_DAEMON_PID_FILE`
+    kill $PID
+    RETVAL=$?
+    [ $RETVAL -eq 0 ] && rm -f $DM_DAEMON_PID_FILE && success $"$DM_DAEMON_NAME shutdown" || failure $"$DM_DAEMON_NAME shutdown"
+    echo
+    return $RETVAL
+}
+
+restart() {
+    stop
+    sleep 1
+    start
+}
+
+case "$ACTION" in
+    start)
+        start
+    ;;
+    stop)
+        stop
+    ;;
+    restart)
+        restart
+    ;;
+    status)
+        status -p $DM_DAEMON_PID_FILE "$DM_DAEMON_NAME" 2> /dev/null
+        RETVAL=$?
+    ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart}"
+        RETVAL=2
+esac
+
+exit $RETVAL

etc/init.d/dm-postgresql

+#!/bin/sh
+
+#
+# dm-postgresql 
+#
+# Starts the PostgreSQL server used for DM software
+# 
+# Modified from the original RHEL postgresql init.d script
+#
+# chkconfig: 345 97 97
+# description: controls Dm database server
+
+### BEGIN INIT INFO
+# Provides: dm-postgresql 
+# Required-Start: $local_fs
+# Required-Stop: $local_fs
+# Default-Start:  2 3 4 5
+# Default-Stop: 0 1 6
+# Description: controls Dm database server
+### END INIT INFO
+
+# PGVERSION is the full package version, e.g., 8.4.0
+#PGVERSION=9.3.4
+PGVERSION=9.6.1
+# PGMAJORVERSION is major version, e.g., 8.4 (this should match PG_VERSION)
+PGMAJORVERSION=`echo "$PGVERSION" | sed 's/^\([0-9]*\.[0-9]*\).*$/\1/'`
+
+# Source function library.
+. /etc/rc.d/init.d/functions
+
+# Get function listing for cross-distribution logic.
+TYPESET=`typeset -f|grep "declare"`
+
+# Get config.
+. /etc/sysconfig/network
+
+# Find the name of the script
+# NAME=`basename $0`
+NAME="DM Database"
+
+# For SELinux we need to use 'runuser' not 'su'
+SU=su
+if [ -x /sbin/runuser ]; then
+    SU=runuser
+fi
+
+# Check if we are root before running command
+runCommand() {
+    _cmd="$@"
+    if [ `id -u` = 0 ]; then
+        $SU -l $PGUSER -c "_$cmd" >> $PGSTARTUPLOG 2>&1 < /dev/null
+    else
+        eval "$_cmd" >> $PGSTARTUPLOG 2>&1 < /dev/null
+    fi
+}
+
+
+# Set defaults for configuration variables
+if [ -z $DM_ROOT_DIR ]; then
+    myDir=`dirname $0`
+    currentDir=`pwd` && cd $myDir/../..
+    export DM_ROOT_DIR=`pwd`
+    cd $currentDir
+fi
+DM_SETUP_FILE=$DM_ROOT_DIR/setup.sh
+if [ ! -f $DM_SETUP_FILE ]; then
+    echo "Setup file $DM_SETUP_FILE does not exist."
+    exit 2
+fi
+. $DM_SETUP_FILE > /dev/null
+
+PGROOT=$DM_OPT_DIR/postgresql/$DM_HOST_ARCH
+PGENGINE=$PGROOT/bin
+#PGUSER=dm
+PGUSER=`whoami`
+PGGROUP=`groups $PGUSER | cut -f3 -d ' '`
+PGPORT=11136    # 111-DM
+PGDATA=$PGROOT/data
+
+PGRUNDIR=$DM_INSTALL_DIR/var/run
+PGLOGDIR=$DM_INSTALL_DIR/var/log
+
+PGSTARTUPLOG=$PGLOGDIR/postgresql
+PGPIDFILE=$PGRUNDIR/postmaster.pid
+PGLOCKFILE=$PGRUNDIR/postmaster.lock
+
+mkdir -p $PGDATA && chown -R $PGUSER:$PGGROUP $PGDATA || exit 1
+mkdir -p $PGRUNDIR && chown -R $PGUSER:$PGGROUP $PGRUNDIR || exit 1
+mkdir -p $PGLOGDIR && chown -R $PGUSER:$PGGROUP $PGLOGDIR || exit 1
+
+export PGDATA
+export PGPORT
+export LD_LIBRARY_PATH=$PGROOT/lib
+
+# Check that networking is up.
+# Pretty much need it for postmaster.
+[ "${NETWORKING}" = "no" ] && exit 1
+
+[ -f "$PGENGINE/postmaster" ] || exit 1
+
+script_result=0
+
+start() {
+    PSQL_START=$"Starting ${NAME} service: "
+
+    # Make sure startup-time log file is valid
+    if [ ! -e "$PGSTARTUPLOG" -a ! -h "$PGSTARTUPLOG" ]; then
+        touch "$PGSTARTUPLOG" || exit 1
+        chown $PGUSER:$PGGROUP "$PGSTARTUPLOG"
+        chmod go-rwx "$PGSTARTUPLOG"
+        [ -x /sbin/restorecon ] && /sbin/restorecon "$PGSTARTUPLOG"
+    fi
+
+    # Check for the PGDATA structure
+    if [ -f "$PGDATA/PG_VERSION" ] && [ -d "$PGDATA/base" ]; then
+        # Check version of existing PGDATA
+        if [ x`cat "$PGDATA/PG_VERSION"` != x"$PGMAJORVERSION" ]; then
+            SYSDOCDIR="(Your System's documentation directory)"
+            echo
+            echo $"An old version of the database format was found."
+            echo $"You need to upgrade the data format before using PostgreSQL."
+            echo $"See $SYSDOCDIR/postgresql-$PGVERSION/README.rpm-dist for more information."
+            exit 1
+        fi
+
+    # No existing PGDATA! Warn the user to initdb it.
+    else
+        echo
+        echo "$PGDATA is missing. Use \"$0 initdb\" to initialize the cluster first."
+        echo_failure
+        echo
+        exit 1
+    fi
+
+    echo -n "$PSQL_START"
+    cmd="$PGENGINE/postmaster -p '$PGPORT' -D '$PGDATA' ${PGOPTS} &"
+    runCommand $cmd
+    sleep 2
+    pid=`pidof -s "$PGENGINE/postmaster"`
+    if [ $pid ] && [ -f "$PGDATA/postmaster.pid" ]; then
+        success "$PSQL_START"
+        touch $PGLOCKFILE
+        head -n 1 "$PGDATA/postmaster.pid" > $PGPIDFILE
+        echo
+    else
+        failure "$PSQL_START"
+        echo
+        script_result=1
+    fi
+}
+
+stop() {
+    echo -n $"Stopping ${NAME} service: "
+    cmd="export LD_LIBRARY_PATH=$LD_LIBRARY_PATH; $PGENGINE/pg_ctl stop -D '$PGDATA' -s -m fast" 
+    runCommand $cmd
+    ret=$? 
+    if [ $ret -eq 0 ]; then
+        echo_success
+    else
+        echo_failure
+        script_result=1
+    fi
+    echo
+    rm -f $PGPIDFILE
+    rm -f $PGLOCKFILE
+}
+
+restart() {
+    stop
+    start
+}
+
+condrestart() {
+    [ -e $PGLOCKFILE ] && restart
+}
+
+condstop() {
+    [ -e $PGLOCKFILE ] && stop
+}
+
+reload() {
+    cmd="export LD_LIBRARY_PATH=$LD_LIBRARY_PATH; $PGENGINE/pg_ctl reload -D '$PGDATA' -s" 
+    runCommand $cmd
+}
+
+initdb() {
+    if [ -f "$PGDATA/PG_VERSION" ]; then
+        echo -n "Data directory is not empty!"
+        echo_failure
+        echo
+        script_result=1
+    else
+        echo -n $"Initializing database: "
+        if [ ! -e "$PGDATA" -a ! -h "$PGDATA" ]; then
+            mkdir -p "$PGDATA" || exit 1
+            chown $PGUSER:$PGGROUP "$PGDATA"
+            chmod go-rwx "$PGDATA"
+        fi
+
+        # Clean up SELinux tagging for PGDATA
+        [ -x /sbin/restorecon ] && /sbin/restorecon "$PGDATA"
+
+        # Make sure the startup-time log file is OK, too
+        if [ ! -e "$PGSTARTUPLOG" -a ! -h "$PGSTARTUPLOG" ]; then
+            touch "$PGSTARTUPLOG" || exit 1
+            chown $PGUSER:$PGGROUP "$PGSTARTUPLOG"
+            chmod go-rwx "$PGSTARTUPLOG"
+            [ -x /sbin/restorecon ] && /sbin/restorecon "$PGSTARTUPLOG"
+        fi
+
+        # Initialize the database
+        cmd="$PGENGINE/initdb --pgdata='$PGDATA' --auth='ident'"
+        runCommand $cmd
+
+        # Create directory for postmaster log
+        mkdir -p "$PGDATA/pg_log"
+        chown $PGUSER:$PGGROUP "$PGDATA/pg_log"
+        chmod go-rwx "$PGDATA/pg_log"
+
+        if [ -f "$PGDATA/PG_VERSION" ]; then
+            echo_success
+        else
+            echo_failure
+            script_result=1
+        fi
+        echo
+    fi
+}
+
+# This script is slightly unusual in that the name of the daemon (postmaster)
+# is not the same as the name of the subsystem (postgresql)
+
+# See how we were called.
+case "$1" in
+    start)
+        start
+        ;;
+    stop)
+        stop
+        ;;
+    status)
+        status postmaster
+        script_result=$?
+        ;;
+    restart)
+        restart
+        ;;
+    condrestart)
+        condrestart
+        ;;
+    condstop)
+        condstop
+        ;;
+    reload|force-reload)
+        reload
+        ;;
+    initdb)
+        initdb
+        ;;
+    *)
+        echo $"Usage: $0 {start|stop|status|restart|condrestart|condstop|reload|force-reload|initdb}"
+        exit 1
+esac
+
+exit $script_result

etc/setup.sh.template

+#!/bin/sh
+
+export DM_ROOT_DIR=
+export DM_WEB_SERVICE_PROTOCOL=https
+export DM_DS_WEB_SERVICE_HOST=
+export DM_DS_WEB_SERVICE_PORT=
+export DM_DAQ_WEB_SERVICE_HOST=
+export DM_DAQ_WEB_SERVICE_PORT=
+export DM_CAT_WEB_SERVICE_HOST=
+export DM_CAT_WEB_SERVICE_PORT=
+export DM_STATION_NAME=
+export DM_ALLOWED_EXPERIMENT_TYPES=TEST
+
+setupFile=$DM_ROOT_DIR/setup.sh
+if [ ! -f $setupFile ]; then
+    echo "Cannot find setup file: $setupFile"
+    exit 1
+fi
+source $setupFile > /dev/null

lib/python

+../src/python
\ No newline at end of file

sbin/catWebService.py

+../src/python/dm/cat_web_service/service/catWebService.py
\ No newline at end of file

sbin/configure_dm_webapp.sh

+#!/bin/sh
+
+#
+# Script used for configuring DM webapp
+# Deployment configuration can be set in etc/$DM_DB_NAME.deploy.conf file
+#
+# Usage:
+#
+# $0 [DM_DB_NAME]
+#
+
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/..
+fi
+DM_INSTALL_DIR=${DM_INSTALL_DIR:=$DM_ROOT_DIR/..}
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+# Use first argument as db name, if provided
+DM_DB_NAME=${DM_DB_NAME:=dm}
+if [ ! -z "$1" ]; then
+    DM_DB_NAME=$1
+fi
+echo "Using DB name: $DM_DB_NAME"
+
+# Look for deployment file in etc directory, and use it to override
+# default entries
+deployConfigFile=$DM_ROOT_DIR/etc/${DM_DB_NAME}.deploy.conf
+if [ -f $deployConfigFile ]; then
+    echo "Using deployment config file: $deployConfigFile"
+    . $deployConfigFile
+else
+    echo "Deployment config file $deployConfigFile not found, using defaults"
+fi
+
+DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m`
+GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH
+JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH
+
+export AS_JAVA=$JAVA_HOME
+ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin 
+
+DM_DB_HOST=${DM_DB_HOST:=localhost}
+DM_DB_PORT=${DM_DB_PORT:=11136}
+DM_DB_USER=${DM_DB_USER:=dm}
+DM_DB_PASSWORD=${DM_DB_PASSWORD:=dm}
+DM_DB_POOL=postgresql_${DM_DB_NAME}_DbPool
+DM_DATA_SOURCE=${DM_DB_NAME}_DataSource
+DM_DOMAIN=domain1
+
+# copy db driver
+echo "Copying db driver"
+rsync -ar $DM_ROOT_DIR/src/java/DmWebPortal/lib/postgresql-9.3-1102.jdbc41.jar $GLASSFISH_DIR/glassfish/domains/${DM_DOMAIN}/lib/ext
+
+# Check password from file
+passwordFile=$DM_INSTALL_DIR/etc/$DM_DB_NAME.db.passwd
+if [ -f $passwordFile ]; then
+    DM_DB_PASSWORD=`cat $passwordFile`
+fi
+
+# restart server
+echo "Restarting glassfish"
+$ASADMIN_CMD stop-domain ${DM_DOMAIN}
+$ASADMIN_CMD start-domain ${DM_DOMAIN}
+
+# create JDBC connection pool
+echo "Creating JDBC connection pool $DM_DB_POOL"
+$ASADMIN_CMD create-jdbc-connection-pool --datasourceclassname org.postgresql.ds.PGSimpleDataSource --restype javax.sql.DataSource --property user=${DM_DB_USER}:password=${DM_DB_PASSWORD}:driverClass="org.postgresql.Driver":portNumber=${DM_DB_PORT}:databaseName=${DM_DB_NAME}:serverName=${DM_DB_HOST}:url="jdbc\:postgresql\://${DM_DB_HOST}\:${DM_DB_PORT}/${DM_DB_NAME}" ${DM_DB_POOL}
+
+# create JDBC resource associated with this connection pool
+echo "Creating JDBC resource $DM_DATA_SOURCE"
+$ASADMIN_CMD create-jdbc-resource --connectionpoolid ${DM_DB_POOL} ${DM_DATA_SOURCE}
+
+# test the connection settings 
+echo "Testing connection"
+$ASADMIN_CMD ping-connection-pool $DM_DB_POOL || exit 1
+

sbin/daqWebService.py

+../src/python/dm/daq_web_service/service/daqWebService.py
\ No newline at end of file

sbin/deploy_dm_webapp.sh

+#!/bin/sh
+
+#
+# Script used for deploying DM webapp
+# Deployment configuration can be set in etc/$DM_DB_NAME.deploy.conf file
+#
+# Usage:
+#
+# $0 [DM_DB_NAME]
+#
+
+MY_DIR=`dirname $0` && cd $MY_DIR && MY_DIR=`pwd`
+if [ -z "${DM_ROOT_DIR}" ]; then
+    DM_ROOT_DIR=$MY_DIR/..
+fi
+DM_ENV_FILE=${DM_ROOT_DIR}/setup.sh
+if [ ! -f ${DM_ENV_FILE} ]; then
+    echo "Environment file ${DM_ENV_FILE} does not exist." 
+    exit 2
+fi
+. ${DM_ENV_FILE} > /dev/null
+
+# Use first argument as db name, if provided
+DM_DB_NAME=${DM_DB_NAME:=dm}
+if [ ! -z "$1" ]; then
+    DM_DB_NAME=$1
+fi
+echo "Using DB name: $DM_DB_NAME"
+
+# Look for deployment file in etc directory, and use it to override
+# default entries
+deployConfigFile=$DM_ROOT_DIR/etc/${DM_DB_NAME}.deploy.conf
+if [ -f $deployConfigFile ]; then
+    echo "Using deployment config file: $deployConfigFile"
+    . $deployConfigFile
+else
+    echo "Deployment config file $deployConfigFile not found, using defaults"
+fi
+
+DM_HOST_ARCH=`uname | tr [A-Z] [a-z]`-`uname -m`
+DM_CONTEXT_ROOT=${DM_CONTEXT_ROOT:=dm}
+GLASSFISH_DIR=$DM_SUPPORT_DIR/glassfish/$DM_HOST_ARCH
+DM_DEPLOY_DIR=$GLASSFISH_DIR/glassfish/domains/domain1/autodeploy
+DM_DIST_DIR=$DM_ROOT_DIR/src/java/DmWebPortal/dist
+DM_BUILD_WAR_FILE=DmWebPortal.war
+DM_WAR_FILE=$DM_CONTEXT_ROOT.war
+JAVA_HOME=$DM_SUPPORT_DIR/java/$DM_HOST_ARCH
+
+if [ ! -f $DM_DIST_DIR/$DM_BUILD_WAR_FILE ]; then
+    echo "$DM_BUILD_WAR_FILE not found in $DM_DIST_DIR."
+    exit 1
+fi
+
+# Modify war file for proper context/persistence settings and
+# repackage it into new war 
+echo "Repackaging war file for context root $DM_CONTEXT_ROOT"
+cd $DM_DIST_DIR
+rm -rf $DM_CONTEXT_ROOT
+mkdir -p $DM_CONTEXT_ROOT
+cd $DM_CONTEXT_ROOT
+jar xf ../$DM_BUILD_WAR_FILE
+
+configFile=WEB-INF/glassfish-web.xml
+cmd="cat $configFile | sed 's?<context-root.*?<context-root>${DM_CONTEXT_ROOT}</context-root>?g' > $configFile.2 && mv $configFile.2 $configFile"
+eval $cmd
+
+configFile=WEB-INF/classes/META-INF/persistence.xml
+cmd="cat $configFile | sed 's?<jta-data-source.*?<jta-data-source>${DM_DB_NAME}_DataSource</jta-data-source>?g' > $configFile.2 && mv $configFile.2 $configFile"
+eval $cmd
+
+jar cf ../$DM_WAR_FILE *
+
+export AS_JAVA=$JAVA_HOME
+ASADMIN_CMD=$GLASSFISH_DIR/bin/asadmin
+
+# copy war file
+echo "Copying war file $DM_DIST_DIR/$DM_WAR_FILE to $DM_DEPLOY_DIR"
+rm -f $DM_DEPLOY_DIR/${DM_WAR_FILE}_*
+cp $DM_DIST_DIR/$DM_WAR_FILE $DM_DEPLOY_DIR
+
+# wait on deployment
+echo "Waiting on war deployment..."
+WAIT_TIME=30
+cd $DM_DEPLOY_DIR
+t=0
+while [ $t -lt $WAIT_TIME ]; do
+    sleep 1
+    deploymentStatus=`ls -c1 ${DM_WAR_FILE}_* 2> /dev/null | sed 's?.*war_??g'`
+    if [ ! -z "$deploymentStatus" ]; then
+        break
+    fi
+    t=`expr $t + 1`
+done
+echo "Deployment Status: $deploymentStatus"
+
+