src/python/dm/ds_web_service/service/impl/authSessionControllerImpl.py

+#!/usr/bin/env python
+
+#
+# Implementation for user info controller.
+#
+
+from dm.common.constants import dmRole
+from dm.common.objects.authorizationPrincipal import AuthorizationPrincipal 
+from dm.common.objects.dmObjectManager import DmObjectManager
+from dm.common.db.api.userDbApi import UserDbApi
+
+class AuthSessionControllerImpl(DmObjectManager):
+    """ User info controller implementation class. """
+
+    def __init__(self):
+        DmObjectManager.__init__(self)
+        self.userDbApi = UserDbApi()
+
+    def getAuthorizationPrincipal(self, username):
+        user = self.userDbApi.getUserWithPasswordByUsername(username)
+        principal = AuthorizationPrincipal(name=username, token=user.get('password'))
+        principal.setRole(dmRole.DM_USER_ROLE)
+        principal.setUserInfo(user)
+        for userSystemRoleName in user.get('userSystemRoleNameList', []):
+            if userSystemRoleName == dmRole.DM_ADMIN_ROLE:
+                principal.setRole(dmRole.DM_ADMIN_ROLE)
+        return principal
+
+

src/python/dm/ds_web_service/service/impl/experimentManager.py

+#!/usr/bin/env python
+
+import threading
+import time
+import os
+
+from dm.common.utility.loggingManager import LoggingManager
+from dm.common.utility.configurationManager import ConfigurationManager
+from dm.common.utility.singleton import Singleton
+from dm.common.utility.osUtility import OsUtility
+from dm.common.utility.valueUtility import ValueUtility
+from dm.common.utility.objectUtility import ObjectUtility
+from dm.common.utility.threadingUtility import ThreadingUtility
+from dm.common.db.api.experimentDbApi import ExperimentDbApi
+from dm.common.processing.fileProcessingManager import FileProcessingManager
+
+class ExperimentManager(Singleton):
+
+    CONFIG_SECTION_NAME = 'ExperimentManager'
+    STORAGE_DIRECTORY_KEY = 'storagedirectory'
+    MANAGE_STORAGE_PERMISSIONS_KEY = 'managestoragepermissions'
+    PLATFORM_UTILITY_KEY = 'platformutility'
+
+    FILE_PERMISSIONS_MODE = 0640
+    DIR_PERMISSIONS_MODE = 0750
+
+    # Singleton.
+    __instanceLock = threading.RLock()
+    __instance = None
+
+    def __init__(self):
+        ExperimentManager.__instanceLock.acquire()
+        try:
+            if ExperimentManager.__instance:
+                return
+            ExperimentManager.__instance = self
+            self.logger = LoggingManager.getInstance().getLogger(self.__class__.__name__)
+
+            self.logger.debug('Initializing')
+            self.lock = threading.RLock()
+            self.experimentDbApi = ExperimentDbApi()
+            self.platformUtility = None
+            self.__configure()
+            self.fileProcessingManager = FileProcessingManager.getInstance()
+            self.logger.debug('Initialization complete')
+        finally:
+            ExperimentManager.__instanceLock.release()
+
+    def __configure(self):
+        cm = ConfigurationManager.getInstance()
+        configItems = cm.getConfigItems(ExperimentManager.CONFIG_SECTION_NAME)
+        self.logger.debug('Got config items: %s' % configItems)
+        self.storageDirectory =cm.getConfigOption(ExperimentManager.CONFIG_SECTION_NAME, ExperimentManager.STORAGE_DIRECTORY_KEY) 
+        self.manageStoragePermissions = ValueUtility.toBoolean(cm.getConfigOption(ExperimentManager.CONFIG_SECTION_NAME, ExperimentManager.MANAGE_STORAGE_PERMISSIONS_KEY))
+        platformUtility = cm.getConfigOption(ExperimentManager.CONFIG_SECTION_NAME, ExperimentManager.PLATFORM_UTILITY_KEY)
+        if platformUtility:
+            (moduleName,className,constructor) = cm.getModuleClassConstructorTuple(platformUtility)
+            self.logger.debug('Creating platform utility class %s' % className)
+            self.platformUtility = ObjectUtility.createObjectInstance(moduleName, className, constructor)
+                                                                            
+        self.logger.debug('Manage storage permissions: %s' % self.manageStoragePermissions)
+
+    def __getExperimentStorageDataDirectory(self, experiment):
+        experimentTypeName = experiment.get('experimentType').get('rootDataPath')
+        experimentName = experiment.get('name')
+        storageDirectory = '%s/%s/%s' % (self.storageDirectory, experimentTypeName, experimentName)
+        storageDirectory = os.path.normpath(storageDirectory)
+        return storageDirectory
+
+    @ThreadingUtility.synchronize
+    def updateExperimentWithStorageDataDirectory(self, experiment):
+        storageDirectory = self.__getExperimentStorageDataDirectory(experiment)
+        if os.path.exists(storageDirectory):
+            experiment['storageDirectory'] = storageDirectory
+            experiment['storageHost'] = ConfigurationManager.getInstance().getHost()
+        return storageDirectory
+
+    @ThreadingUtility.synchronize
+    def createExperimentDataDirectory(self, experiment):
+        experimentName = experiment.get('name')
+        storageDirectory = self.__getExperimentStorageDataDirectory(experiment)
+        if os.path.exists(storageDirectory):
+            self.logger.debug('Data directory %s for experiment %s already exists' % (storageDirectory, experimentName))
+        else:
+            self.logger.debug('Creating data directory for experiment %s: %s' % (experimentName, storageDirectory))
+            OsUtility.createDir(storageDirectory)
+        experiment['storageDirectory'] = storageDirectory
+        experiment['storageHost'] = ConfigurationManager.getInstance().getHost()
+        if self.manageStoragePermissions:
+            # Create experiment group
+            self.platformUtility.createGroup(experimentName)
+            self.logger.debug('Setting permissions for %s to %s' % (storageDirectory, self.DIR_PERMISSIONS_MODE))
+            OsUtility.chmodPath(storageDirectory, dirMode=self.DIR_PERMISSIONS_MODE)
+            self.logger.debug('Changing group owner for %s to %s' % (storageDirectory, experimentName))
+            self.platformUtility.changePathGroupOwner(storageDirectory, experimentName)
+
+            experimentUsers = experiment.get('experimentUsernameList', [])
+            self.logger.debug('Found experiment users: %s', experimentUsers)
+            for username in experimentUsers:
+                self.platformUtility.addUserToGroup(username, experimentName)
+      
+    @ThreadingUtility.synchronize
+    def processExperimentFile(self, experimentFilePath, experiment, fileInfo={}):
+        experimentName = experiment.get('name')
+        self.updateExperimentWithStorageDataDirectory(experiment)
+        storageDirectory = experiment.get('storageDirectory')
+        filePath = os.path.join(storageDirectory, experimentFilePath)
+        fileInfo['filePath'] = filePath
+        fileInfo['experiment'] = experiment
+        if os.path.exists(filePath):
+            self.logger.debug('Processing file path %s (fileInfo: %s)' % (filePath, fileInfo))
+            if self.manageStoragePermissions:
+                self.logger.debug('Modifying permissions for %s' % filePath)
+                OsUtility.chmodPath(filePath, fileMode=self.FILE_PERMISSIONS_MODE)
+                self.logger.debug('Changing group owner for %s to %s' % (filePath, experimentName))
+                self.platformUtility.changePathGroupOwner(filePath, experimentName)
+                self.logger.debug('Processing file %s' % filePath)
+                self.fileProcessingManager.processFile(fileInfo)
+        else:
+            self.logger.debug('File path %s does not exist' % filePath)
+
+    @ThreadingUtility.synchronize
+    def start(self):
+        self.logger.debug('Started experiment manager')
+
+    @ThreadingUtility.synchronize
+    def stop(self):
+        self.logger.debug('Stopped experiment manager')
+
+####################################################################
+# Testing
+
+if __name__ == '__main__':
+    em = ExperimentManager.getInstance()
+    print em
+

src/python/dm/ds_web_service/service/impl/experimentSessionControllerImpl.py

+#!/usr/bin/env python
+
+#
+# Implementation for experiment session controller.
+#
+
+import time
+
+from dm.common.objects.experiment import Experiment
+from dm.common.objects.dmObjectManager import DmObjectManager
+from dm.common.exceptions.invalidRequest import InvalidRequest
+from dm.common.db.api.experimentDbApi import ExperimentDbApi
+from dm.ds_web_service.service.impl.experimentManager import ExperimentManager
+
+class ExperimentSessionControllerImpl(DmObjectManager):
+    """ Experiment session controller implementation class. """
+
+    def __init__(self):
+        DmObjectManager.__init__(self)
+        self.experimentDbApi = ExperimentDbApi()
+
+    def getExperimentTypes(self):
+        experimentTypeList = self.experimentDbApi.getExperimentTypes()
+        return experimentTypeList
+
+    def getExperiments(self):
+        experimentList = self.experimentDbApi.getExperiments()
+        return experimentList
+
+    def getExperimentByName(self, name):
+        experiment = self.experimentDbApi.getExperimentWithUsers(name)
+        ExperimentManager.getInstance().updateExperimentWithStorageDataDirectory(experiment)
+        return experiment
+
+    def getExperimentById(self, id):
+        experiment = self.experimentDbApi.getExperimentById(id)
+        ExperimentManager.getInstance().updateExperimentWithStorageDataDirectory(experiment)
+        return experiment
+
+    def addExperiment(self, name, experimentTypeId, description, startDate, endDate):
+        experiment = self.experimentDbApi.addExperiment(name, experimentTypeId, description, startDate, endDate)
+        return experiment
+
+    def startExperiment(self, name):
+        experiment = self.experimentDbApi.getExperimentWithUsers(name)
+        #if experiment.get('startDate') is None:
+        #    experiment2 = self.experimentDbApi.setExperimentStartDateToNow(name)
+        #    experiment['startDate'] = experiment2['startDate']
+        ExperimentManager.getInstance().createExperimentDataDirectory(experiment)
+        return experiment
+
+    def stopExperiment(self, name):
+        experiment = self.experimentDbApi.getExperimentByName(name)
+        #if experiment.get('endDate') is None:
+        #    experiment = self.experimentDbApi.setExperimentEndDateToNow(name)
+        ExperimentManager.getInstance().updateExperimentWithStorageDataDirectory(experiment)
+        return experiment
+

src/python/dm/ds_web_service/service/impl/fileSessionControllerImpl.py

+#!/usr/bin/env python
+
+#
+# Implementation for file session controller.
+#
+
+import time
+
+from dm.common.objects.dmObjectManager import DmObjectManager
+from dm.common.exceptions.invalidRequest import InvalidRequest
+from dm.common.objects.fileMetadata import FileMetadata
+from dm.common.db.api.experimentDbApi import ExperimentDbApi
+from dm.ds_web_service.service.impl.experimentManager import ExperimentManager
+
+class FileSessionControllerImpl(DmObjectManager):
+    """ File session controller implementation class. """
+
+    def __init__(self):
+        DmObjectManager.__init__(self)
+        self.experimentDbApi = ExperimentDbApi()
+
+    def processFile(self, fileInfo):
+        experimentFilePath = fileInfo.get('experimentFilePath')
+        experimentName = fileInfo.get('experimentName')
+        experiment = self.experimentDbApi.getExperimentByName(experimentName)
+        ExperimentManager.getInstance().processExperimentFile(experimentFilePath, experiment, fileInfo)
+        return FileMetadata(fileInfo)

src/python/dm/ds_web_service/service/impl/mongoDbFileCatalogPlugin.py

+#!/usr/bin/env python
+
+import os
+import time
+from dm.common.utility.loggingManager import LoggingManager
+from dm.common.utility.timeUtility import TimeUtility
+from dm.common.processing.plugins.fileProcessor import FileProcessor
+from dm.common.mongodb.api.fileMongoDbApi import FileMongoDbApi
+
+class MongoDbFileCatalogPlugin(FileProcessor):
+
+    def __init__(self):
+        FileProcessor.__init__(self)
+        self.fileMongoDbApi = FileMongoDbApi()
+        self.logger = LoggingManager.getInstance().getLogger(self.__class__.__name__)
+
+    def processFile(self, fileInfo):
+        experimentFilePath = fileInfo.get('experimentFilePath')
+        experiment = fileInfo.get('experiment')
+        experimentName = experiment.get('name')
+        self.logger.debug('Processing file %s for experiment %s' % (fileInfo, experimentName))
+
+        experimentStorageDirectory = experiment.get('storageDirectory')
+        storageHost = experiment.get('storageHost')
+        storageFilePath = os.path.join(experimentStorageDirectory, experimentFilePath)
+        fileProcessingTime = time.time()
+        fileProcessingTimeStamp = TimeUtility.formatLocalTimeStamp(fileProcessingTime)
+
+        # Prepare catalogging entry
+        fileInfo2 = {}
+        fileInfo2['fileName'] = os.path.basename(experimentFilePath)
+        fileInfo2['experimentStorageDirectory'] = experimentStorageDirectory
+        fileInfo2['storageHost'] = storageHost
+        fileInfo2['storageFilePath'] = storageFilePath
+        fileInfo2['experimentFilePath'] = experimentFilePath
+        fileInfo2['experimentName'] = experimentName
+        fileInfo2['fileProcessingTime'] = fileProcessingTime
+        fileInfo2['fileProcessingTimeStamp'] = fileProcessingTimeStamp
+        fileInfo2.update(fileInfo.get('daqInfo', {}))
+        self.fileMongoDbApi.updateOrAddExperimentFile(fileInfo2)
+
+
+#######################################################################
+# Testing.
+if __name__ == '__main__':
+    pass

src/python/dm/ds_web_service/service/impl/scriptProcessingPlugin.py

+#!/usr/bin/env python
+
+import os
+import time
+from dm.common.utility.loggingManager import LoggingManager
+from dm.common.utility.timeUtility import TimeUtility
+from dm.common.processing.plugins.fileProcessor import FileProcessor
+from dm.common.mongodb.api.fileMongoDbApi import FileMongoDbApi
+from dm.common.utility.dmSubprocess import DmSubprocess
+
+class ScriptProcessingPlugin(FileProcessor):
+
+    PROCESSING_SCRIPT_KEY = 'processingScript'
+
+    def __init__(self):
+        FileProcessor.__init__(self)
+        self.fileMongoDbApi = FileMongoDbApi()
+        self.logger = LoggingManager.getInstance().getLogger(self.__class__.__name__)
+
+    def processFile(self, fileInfo):
+        experiment = fileInfo.get('experiment')
+        experimentName = experiment.get('name')
+        experimentFilePath = fileInfo.get('experimentFilePath')
+        daqInfo = fileInfo.get('daqInfo', {})
+        processingScript = daqInfo.get(self.PROCESSING_SCRIPT_KEY)
+        if not processingScript:
+            self.logger.debug('Ignoring file %s for experiment %s' % (experimentFilePath, experimentName))
+            return
+  
+        self.logger.debug('Processing file %s for experiment %s' % (experimentFilePath, experimentName))
+
+        experimentStorageDirectory = experiment.get('storageDirectory')
+        storageFilePath = os.path.join(experimentStorageDirectory, experimentFilePath)
+
+        # Process file
+        try:
+            p = DmSubprocess('%s %s' % (processingScript, storageFilePath))
+            p.run()
+            stdOut = p.getStdOut()
+        except Exception, ex:
+            self.logger.error('Cannot process file %s for experiment %s: %s' % (experimentFilePath, experimentName, ex))
+            return
+
+        # Prepare catalogging entry
+        fileInfo2 = {}
+        fileInfo2['fileName'] = os.path.basename(experimentFilePath)
+        fileInfo2['experimentName'] = experimentName
+        fileInfo2['processingScriptOutput'] = '%s' % stdOut.strip()
+        self.fileMongoDbApi.updateOrAddExperimentFile(fileInfo2)
+
+
+#######################################################################
+# Testing.
+if __name__ == '__main__':
+    pass

src/python/dm/ds_web_service/service/impl/sddsParameterProcessingPlugin.py

+#!/usr/bin/env python
+
+import os
+import time
+from dm.common.utility.loggingManager import LoggingManager
+from dm.common.utility.timeUtility import TimeUtility
+from dm.common.processing.plugins.fileProcessor import FileProcessor
+from dm.common.mongodb.api.fileMongoDbApi import FileMongoDbApi
+
+class SddsParameterProcessingPlugin(FileProcessor):
+
+    PROCESS_SDDS_PARAMETERS_KEY = 'processSddsParameters'
+
+    def __init__(self):
+        FileProcessor.__init__(self)
+        self.fileMongoDbApi = FileMongoDbApi()
+        self.logger = LoggingManager.getInstance().getLogger(self.__class__.__name__)
+
+
+    def processFile(self, fileInfo):
+        experimentFilePath = fileInfo.get('experimentFilePath')
+        experiment = fileInfo.get('experiment')
+        experimentName = experiment.get('name')
+        daqInfo = fileInfo.get('daqInfo', {})
+        processSddsParameters = daqInfo.get(self.PROCESS_SDDS_PARAMETERS_KEY)
+        if not processSddsParameters:
+            self.logger.debug('Ignoring file %s for experiment %s' % (experimentFilePath, experimentName))
+            return
+
+        self.logger.debug('Processing file %s for experiment %s' % (fileInfo, experimentName))
+
+        experimentStorageDirectory = experiment.get('storageDirectory')
+        storageFilePath = os.path.join(experimentStorageDirectory, experimentFilePath)
+
+        # Load file
+        try:
+            import sddsdata
+            from sdds import SDDS
+            s = SDDS(0)
+            self.logger.error('Loading file %s for experiment %s' % (experimentFilePath, experimentName))
+            s.load(storageFilePath)
+        except Exception, ex:
+            self.logger.error('Cannot process file %s for experiment %s: %s' % (experimentFilePath, experimentName, ex))
+            return
+
+        # Prepare catalogging entry
+        fileInfo2 = {}
+        fileInfo2['fileName'] = os.path.basename(experimentFilePath)
+        fileInfo2['experimentName'] = experimentName
+        for i in range(0,len(s.parameterName)):
+            parameterName = s.parameterName[i]
+            parameterData = s.parameterData[i][0]
+            fileInfo2[parameterName] = parameterData
+        self.fileMongoDbApi.updateOrAddExperimentFile(fileInfo2)
+
+        self.logger.error('SDDS terminate file %s for experiment %s' % (experimentFilePath, experimentName))
+        sddsdata.Terminate(0)
+
+
+#######################################################################
+# Testing.
+if __name__ == '__main__':
+    pass

src/python/dm/ds_web_service/service/impl/sgeJobSubmissionPlugin.py

+#!/usr/bin/env python
+
+import os
+import time
+from dm.common.utility.loggingManager import LoggingManager
+from dm.common.utility.timeUtility import TimeUtility
+from dm.common.processing.plugins.fileProcessor import FileProcessor
+from dm.common.utility.dmSubprocess import DmSubprocess
+
+class SgeJobSubmissionPlugin(FileProcessor):
+
+    SGE_JOB_SCRIPT_KEY = 'sgeJobScript'
+
+    def __init__(self, sgeRoot):
+        FileProcessor.__init__(self)
+        self.sgeRoot = sgeRoot
+        self.logger = LoggingManager.getInstance().getLogger(self.__class__.__name__)
+
+    def processFile(self, fileInfo):
+        experiment = fileInfo.get('experiment')
+        experimentName = experiment.get('name')
+        experimentFilePath = fileInfo.get('experimentFilePath')
+        daqInfo = fileInfo.get('daqInfo', {})
+        sgeJobScript = daqInfo.get(self.SGE_JOB_SCRIPT_KEY)
+        if not sgeJobScript:
+            self.logger.debug('Ignoring file %s for experiment %s' % (experimentFilePath, experimentName))
+            return
+  
+        self.logger.debug('Processing file %s for experiment %s' % (experimentFilePath, experimentName))
+
+        experimentStorageDirectory = experiment.get('storageDirectory')
+        storageFilePath = os.path.join(experimentStorageDirectory, experimentFilePath)
+
+        # Process file
+        try:
+            p = DmSubprocess('. %s/default/common/settings.sh ; qsub -v DM_EXPERIMENT_NAME=%s %s %s' % (self.sgeRoot, experimentName, sgeJobScript, storageFilePath))
+            p.run()
+        except Exception, ex:
+            self.logger.error('Cannot process file %s for experiment %s: %s' % (experimentFilePath, experimentName, ex))
+            return
+
+#######################################################################
+# Testing.
+if __name__ == '__main__':
+    pass

src/python/dm/ds_web_service/service/impl/userInfoSessionControllerImpl.py

+#!/usr/bin/env python
+
+#
+# Implementation for user info controller.
+#
+
+from dm.common.objects.dmObject import DmObject
+from dm.common.objects.dmObjectManager import DmObjectManager
+from dm.common.db.api.userDbApi import UserDbApi
+
+class UserInfoSessionControllerImpl(DmObjectManager):
+    """ User info controller implementation class. """
+
+    def __init__(self):
+        DmObjectManager.__init__(self)
+        self.userDbApi = UserDbApi()
+
+    def getUsers(self):
+        return self.userDbApi.getUsers()
+
+    def getUserById(self, id):
+        return self.userDbApi.getUserById(id)
+
+    def getUserByUsername(self, username):
+        return self.userDbApi.getUserByUsername(username)
+
+    def addUserExperimentRole(self, username, experimentName, roleName):
+        return self.userDbApi.addUserExperimentRole(username, experimentName, roleName)
+

src/python/dm/ds_web_service/service/userInfoSessionController.py

+#!/usr/bin/env python
+
+import cherrypy
+from dm.common.service.dmSessionController import DmSessionController
+from dm.ds_web_service.service.impl.userInfoSessionControllerImpl import UserInfoSessionControllerImpl
+
+class UserInfoSessionController(DmSessionController):
+
+    def __init__(self):
+        DmSessionController.__init__(self)
+        self.userInfoSessionControllerImpl = UserInfoSessionControllerImpl()
+
+    @cherrypy.expose
+    @DmSessionController.require(DmSessionController.isAdministrator())
+    @DmSessionController.execute
+    def getUsers(self, **kwargs):
+        return self.listToJson(self.userInfoSessionControllerImpl.getUsers())
+
+    @cherrypy.expose
+    @DmSessionController.require(DmSessionController.isAdministrator())
+    @DmSessionController.execute
+    def getUserById(self, id, **kwargs):
+        if not id:
+            raise InvalidRequest('Invalid id provided.')
+        response = self.userInfoSessionControllerImpl.getUserById(id).getFullJsonRep()
+        self.logger.debug('Returning user info for %s: %s' % (id,response))
+        return response
+
+    @cherrypy.expose
+    @DmSessionController.require(DmSessionController.isAdministrator())
+    @DmSessionController.execute
+    def getUserByUsername(self, username, **kwargs):
+        if not len(username):
+            raise InvalidRequest('Invalid username provided.')
+        response = self.userInfoSessionControllerImpl.getUserByUsername(username).getFullJsonRep()
+        self.logger.debug('Returning user info for %s: %s' % (username,response))
+        return response
+
+    @cherrypy.expose
+    @DmSessionController.require(DmSessionController.isAdministrator())
+    @DmSessionController.execute
+    def addUserExperimentRole(self, username, experimentName, roleName, **kwargs):
+        if not username:
+            raise InvalidRequest('Invalid username provided.')
+        if not experimentName:
+            raise InvalidRequest('Invalid experiment name provided.')
+        if not roleName:
+            raise InvalidRequest('Invalid role name provided.')
+        response = self.userInfoSessionControllerImpl.addUserExperimentRole(username, experimentName, roleName).getFullJsonRep()
+        return response
+

src/python/dm/ds_web_service/service/userRouteDescriptor.py

+#!/usr/bin/env python
+
+#
+# User route descriptor.
+#
+
+from dm.common.utility.configurationManager import ConfigurationManager
+from userInfoSessionController import UserInfoSessionController
+
+class UserRouteDescriptor:
+
+    @classmethod
+    def getRoutes(cls):
+        contextRoot = ConfigurationManager.getInstance().getContextRoot()
+
+        # Static instances shared between different routes
+        userInfoSessionController = UserInfoSessionController()
+
+        # Define routes.
+        routes = [
+
+            # Get user info list
+            {
+                'name' : 'getUsers',
+                'path' : '%s/users' % contextRoot,
+                'controller' : userInfoSessionController,
+                'action' : 'getUsers', 
+                'method' : ['GET']
+            },
+
+            # Get user by id
+            {
+                'name' : 'getUserById',
+                'path' : '%s/users/:(id)' % contextRoot,
+                'controller' : userInfoSessionController,
+                'action' : 'getUserById', 
+                'method' : ['GET']
+            },
+
+            # Get user by username
+            {
+                'name' : 'getUserByUsername',
+                'path' : '%s/usersByUsername/:(username)' % contextRoot,
+                'controller' : userInfoSessionController,
+                'action' : 'getUserByUsername', 
+                'method' : ['GET']
+            },
+
+            # Add user experiment role
+            {
+                'name' : 'addUserExperimentRole',
+                'path' : '%s/usersByExperiment/:(username)/:(experimentName)/:(roleName)' % contextRoot,
+                'controller' : userInfoSessionController,
+                'action' : 'addUserExperimentRole',
+                'method' : ['POST']
+            },
+
+        ]
+       
+        return routes
+
+

tools/AccountSynchronizer/accountSynchronizer/.classpath

+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="src" path="resources"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="lib" path="/home/phoebus/BFROSIK/trunk/tools/AccountSynchronizer/lib/ojdbc7.jar"/>
+	<classpathentry kind="lib" path="/home/phoebus/BFROSIK/trunk/tools/AccountSynchronizer/lib/postgresql-9.4-1201.jdbc4.jar"/>
+	<classpathentry kind="lib" path="/home/phoebus/BFROSIK/trunk/tools/AccountSynchronizer/lib/unboundid-ldapsdk-me.jar"/>
+	<classpathentry kind="output" path="bin"/>
+</classpath>

tools/AccountSynchronizer/accountSynchronizer/.project

+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>accountSynchronizer</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

tools/AccountSynchronizer/accountSynchronizer/manifest.txt

+Main-Class: gov.anl.aps.dm.sync.Synchronizer
+Class-Path: . ../../lib/postgresql-9.4-1201.jdbc4.jar ../../lib/ojdbc7.jar
+

tools/AccountSynchronizer/accountSynchronizer/resources/config.properties

+### log congiguration
+log.file = accountSynchronizer%g.log
+log.limit = 6000
+log.count = 2
+
+###
+### Oracle database settings
+###
+oracle.database.connection = jdbc:oracle:thin:@ra.aps.anl.gov:1527:aps1
+oracle.database.username = glob_conn
+#oracle.database.password = 
+oracle.database.table = DCC.FL$03_BL_APV_VIEW_V2
+
+dm.database.connection = jdbc:postgresql://127.0.0.1:11136/dm
+dm.database.username = dm
+### dm.database.password = 
+
+# The user name prefix that gets append to every badge number.
+user.userid.prefix = d
+

tools/AccountSynchronizer/accountSynchronizer/src/gov/anl/aps/dm/sync/DmUser.java

+package gov.anl.aps.dm.sync;
+
+public class DmUser {
+    String username;
+    String firstName;
+    String lastName;
+    String middleName;
+    String email;
+    String badge;
+    String password;
+ 
+    void clear() {
+        username = null;
+        firstName = null;
+        lastName = null;
+        middleName = null;
+        email = null;
+        badge = null;
+        password = null;
+    }
+}

tools/AccountSynchronizer/accountSynchronizer/src/gov/anl/aps/dm/sync/OracleConnection.java

+package gov.anl.aps.dm.sync;
+
+import java.sql.DriverManager;
+import java.sql.Connection;
+import java.sql.ResultSet;
+import java.sql.SQLException;
+import java.sql.Statement;
+import java.util.Properties;
+import java.util.logging.Level;
+import java.util.logging.Logger;
+
+public class OracleConnection {
+    Connection connection = null;
+    private Logger logger;
+
+    public OracleConnection(Logger logger) {
+    	this.logger = logger;
+    }
+    
+    void connect(Properties config) throws SQLException {
+        try {
+            DriverManager.registerDriver(new oracle.jdbc.OracleDriver());
+
+        } catch (SQLException e) {
+            logger.log(Level.SEVERE, "Can't establish Oracle Driver", e);
+            throw e;
+        }
+//        logger.log(Level.INFO, "Oracle JDBC Driver Registered!");
+
+        try {
+            connection = DriverManager.getConnection(
+                    config.getProperty("oracle.database.connection"),
+                    config.getProperty("oracle.database.username"),
+                    config.getProperty("oracle.database.password"));
+        } catch (SQLException e) {
+            logger.log(Level.SEVERE, "Can't connect to Oracle data base", e);
+            throw e;
+        }        
+    }
+    
+    ResultSet getUsers(String table) throws SQLException {
+        try {
+            Statement statement = connection.createStatement();
+            return statement.executeQuery("select * from " + table);
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "table {0} does not exist", table);
+            throw ex;
+        }
+    }
+    
+    void close() {
+        try {
+            connection.close();
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "problem closing Oracle connection ", ex);
+        }
+    }
+}

tools/AccountSynchronizer/accountSynchronizer/src/gov/anl/aps/dm/sync/PsqlConnection.java

+package gov.anl.aps.dm.sync;
+
+import java.sql.DriverManager;
+import java.sql.Connection;
+import java.sql.PreparedStatement;
+import java.sql.ResultSet;
+import java.sql.SQLException;
+import java.sql.Statement;
+import java.sql.Timestamp;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.Properties;
+import java.util.logging.Level;
+import java.util.logging.Logger;
+
+public class PsqlConnection {
+    Connection connection = null;
+    private final Map<String, Timestamp> dmUsers = new HashMap<>();    // <username, lastUpdate>
+    private PreparedStatement insertQuery;
+    private PreparedStatement updateQuery;
+    private final String userTable = "user_info";
+
+    private Logger logger;
+
+    public PsqlConnection(Logger logger) {
+    	this.logger = logger;
+    }
+    
+    void connect(Properties config) throws SQLException {
+        try {
+            Class.forName("org.postgresql.Driver");
+        } catch (ClassNotFoundException e) {
+            logger.log(Level.SEVERE, "Can't establish PosgreSQL Driver", e);
+            System.exit(0);
+        }
+//        logger.log(Level.INFO, "PostgreSQL JDBC Driver Registered!");
+
+        try {
+            connection = DriverManager.getConnection(
+                    config.getProperty("dm.database.connection"),
+                    config.getProperty("dm.database.username"),
+                    config.getProperty("dm.database.password"));
+        } catch (SQLException e) {
+            logger.log(Level.SEVERE, "Can't connect to PostgreSQL data base");
+            throw e;
+        }
+    }
+    
+    void init() throws SQLException {
+        Statement statement = null;
+        try {
+            statement = connection.createStatement();
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "can't create statement for postgreSQL connection");
+            throw ex;
+        }
+        ResultSet results = null;
+        try {
+            if (statement != null) {
+                results = statement.executeQuery("SELECT * FROM " + userTable + ";");
+            }
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "can't execute SELECT query from " + userTable + " table");
+            throw ex;
+        }
+        try {
+            if (results != null) {
+                while (results.next()) {
+                    String username = results.getString("username");
+                    Timestamp lastUpdate = results.getTimestamp("last_update");
+                    dmUsers.put(username, lastUpdate);
+                }
+                results.close();
+            }
+            if (statement != null) {
+                statement.close();
+            }
+        } catch (SQLException ex) {
+            logger.log(Level.WARNING, "query results processing error ", ex);
+        }
+       
+        // prepare statements
+        try {
+            insertQuery = connection.prepareStatement ("INSERT INTO user_info (username, first_name, last_name, middle_name, email, badge, is_local_user, last_update) VALUES (?, ?, ?, ?, ?, ?, ?, ?)");
+            updateQuery = connection.prepareStatement ("UPDATE user_info SET email = ?, last_name = ?, last_update = ? WHERE username = ?");
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "Can't get peaparedStatement from connection ", ex);
+            throw ex;
+        }
+
+    }
+
+    protected Timestamp getUserLastUpdate(String username) {
+    	return dmUsers.get(username);
+    }
+    boolean isUser(String username) {
+        return dmUsers.containsKey(username);
+    }
+    
+    void addUser(DmUser dmuser, Timestamp currentTime) {
+        try {
+            insertQuery.setString(1, dmuser.username);
+            insertQuery.setString(2, dmuser.firstName);
+            insertQuery.setString(3, dmuser.lastName);
+            insertQuery.setString(4, dmuser.middleName);
+            insertQuery.setString(5, dmuser.email);
+            insertQuery.setString(6, dmuser.badge);
+            insertQuery.setBoolean(7, false);
+            insertQuery.setTimestamp(8, currentTime);
+            insertQuery.execute();
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "can't execute query to add user ", ex);
+        }
+    }
+ 
+    void updateUser(DmUser dmuser, Timestamp currentTime) {
+        try {
+            updateQuery.setString(1, dmuser.email);
+            updateQuery.setString(2, dmuser.lastName);
+            updateQuery.setTimestamp(3, currentTime);
+            updateQuery.setString(4, dmuser.username);
+            updateQuery.executeUpdate();
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "can't execute query to update user", ex);
+        }
+    }
+ 
+    void close() {
+        try {
+            insertQuery.close();
+            updateQuery.close();
+            connection.close();
+        } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "problem closing PostgreSQL connection ", ex);
+        }
+    }
+}

tools/AccountSynchronizer/accountSynchronizer/src/gov/anl/aps/dm/sync/Synchronizer.java

+package gov.anl.aps.dm.sync;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.FileInputStream;
+import java.sql.ResultSet;
+import java.sql.SQLException;
+import java.sql.Timestamp;
+import java.util.Properties;
+import java.util.logging.FileHandler;
+import java.util.logging.Level;
+import java.util.logging.Logger;
+
+public class Synchronizer {
+    private OracleConnection oConnection;
+    private PsqlConnection pConnection;
+    private final Properties config = new Properties();
+    private final Properties tableRows = new Properties();
+    private final String oracleTable = "oracleTable.properties";
+    private FileHandler fileHandler;
+    
+    private static final Logger logger = Logger.getLogger("AccountSynchronizerLogger");
+
+    public static void main(String[] argv) {
+        Synchronizer sync = new Synchronizer();
+        sync.loadProperties(argv[0]);
+        sync.initLogger();
+        sync.oConnection = new OracleConnection(logger);
+        sync.pConnection = new PsqlConnection(logger);
+        sync.connectAndInit();
+        sync.synchronize();
+    }
+    
+    private void loadProperties(String configFile) {
+        InputStream configInputStream = null;
+	try {
+               configInputStream = new FileInputStream(configFile);
+        } catch (Exception e) {
+               e.printStackTrace();
+        }    
+
+        if (configInputStream != null) {
+            try {
+                this.config.load(configInputStream);
+            } catch (IOException ex) {
+            	initDefaultLogger();
+                logger.log(Level.SEVERE, "can't load configuration ", ex);
+                System.exit(-1);
+            }
+        } else {
+            initDefaultLogger();
+            logger.log(Level.SEVERE, "can't find configuration file");
+            System.exit(-1);
+        }
+        
+        InputStream tableInputStream = getClass().getClassLoader().getResourceAsStream(oracleTable);
+        if (tableInputStream != null) {
+            try {
+                this.tableRows.load(tableInputStream);
+            } catch (IOException ex) {
+                logger.log(Level.SEVERE, "can't load Oracle table rows definitions ", ex);
+                System.exit(-1);
+            }
+        }
+   }
+    
+    private void initDefaultLogger() {
+        	try {
+    			fileHandler = new FileHandler("accountSynchronizer.log");
+    			logger.addHandler(fileHandler);
+                logger.log(Level.WARNING, "Using default logger ");
+    		} catch (SecurityException | IOException ex) {
+    			ex.printStackTrace();
+    			System.exit(-1);
+    		}    		
+    }
+    
+    private void initLogger() {
+    	String pattern = config.getProperty("log.file"); 
+    	int limit = 0;
+    	int count = 0;
+    	try {
+    		String limitProperty = config.getProperty("log.limit");
+    		limit = Integer.decode(limitProperty);
+    		count = Integer.decode(config.getProperty("log.count"));
+    	} catch (NumberFormatException e) {
+        	initDefaultLogger();
+            logger.log(Level.WARNING, "The logger limit or count are not configured properly. ", e);
+    		System.exit(-1);
+    	}
+    	try {
+			fileHandler = new FileHandler(pattern, limit, count);
+			logger.addHandler(fileHandler);
+		} catch (SecurityException | IOException e) {
+			e.printStackTrace();
+			System.exit(-1);
+		}
+    }
+    
+    private void connectAndInit() {
+        try {
+            pConnection.connect(config);
+        }
+        catch (SQLException e) {
+            System.exit(-1);            
+        }
+        try {
+            oConnection.connect(config);
+        }
+        catch (SQLException e) {
+            pConnection.close();
+            System.exit(-1);
+        }
+        try {
+            pConnection.init();
+        }
+        catch (SQLException e) {
+            pConnection.close();
+            oConnection.close();
+            System.exit(-1);
+        }      
+    }
+    
+    private void synchronize() {
+        java.util.Calendar cal = java.util.Calendar.getInstance();
+        Timestamp current = new Timestamp(cal.getTimeInMillis());
+        DmUser dmuser = new DmUser();
+        try {
+            ResultSet results = oConnection.getUsers(config.getProperty("oracle.database.table"));
+            while (results.next()) {
+                String badge = results.getString("BADGE_NO");
+                String username = config.getProperty("user.userid.prefix") + badge;
+                if (pConnection.isUser(username)) {
+                	Timestamp userLastUpdate = pConnection.getUserLastUpdate(username);
+                    if ((results.getTimestamp("LAST_CHANGE_DATE") == null) || (userLastUpdate == null) || (results.getTimestamp("LAST_CHANGE_DATE").compareTo(userLastUpdate) >= 0)) {
+                        // update user
+                       dmuser.email = results.getString("EMAIL");
+                        dmuser.username = username;
+                        dmuser.lastName = results.getString("LAST_NAME");
+                       pConnection.updateUser(dmuser, current);
+                       dmuser.clear();
+                    }
+                } else {
+                    // add user
+                    dmuser.badge = badge;
+                    dmuser.email = results.getString("EMAIL");
+                    dmuser.firstName = results.getString("FIRST_NAME");
+                    dmuser.lastName = results.getString("LAST_NAME");
+                    dmuser.middleName = results.getString("MIDDLE_NAME");
+                    dmuser.username = username;
+                    pConnection.addUser(dmuser, current);
+                    dmuser.clear();
+                }
+            }
+         } catch (SQLException ex) {
+            logger.log(Level.SEVERE, "table processing error ", ex);
+        }
+        finally {
+            pConnection.close();
+            oConnection.close();            
+        }
+    }
+    
+}